formatted comments

src/forces.jl

@@ -1,5 +1,5 @@
 """
-  forces!(x::Vector{T},f::Vector{T},opt::Options) where T
+    forces!(x::Vector{T},f::Vector{T},opt::Options) where T
 
 Subroutine that computes the force. It modifies the input `f` vector.
 

src/image.jl

@@ -1,5 +1,5 @@
 """
-image(x,sides)
+    image(x,sides)
 
 Move coordinates to minimum perioddic image.
 

src/init_velocities.jl

@@ -1,5 +1,5 @@
 """
-init_velocities(sys::System{T},opt::Options) where T
+    init_velocities(sys::System{T},opt::Options) where T
 
 Initialize velocities with random distribution.
 
@@ -28,10 +28,7 @@ function init_velocities(sys::System{T}, opt::Options) where {T}
 end
 
 """
-
-```
-function random_rotate(v)
-```
+    random_rotate(v)
 
 Randomly rotate vector `v`, which might be a `Point2D` or a `Point3D`
 

src/kinetic.jl

@@ -1,5 +1,5 @@
 """
-  kinetic(v)
+    kinetic(v)
 
 Function that computes the kinetic energy given a velocity vector `v`.
 

src/mc.jl

@@ -1,6 +1,5 @@
-
 """
-  mc(sys::System{T},opt=Options=Options()) where T
+    mc(sys::System{T},opt=Options=Options()) where T
 
 Peforms a Monte-Carlos simulation.
 

src/md-berendsen.jl

@@ -1,5 +1,5 @@
 """
-  md_berendsen(sys::System{T},opt::Options) where T
+    md_berendsen(sys::System{T},opt::Options) where T
 
 Performs a MD simulation with a Berendsen bath. 
 

src/md-isokinetic.jl

@@ -1,5 +1,5 @@
 """
-  md_isokinetic(sys::System{T},opt::Options) where T
+    md_isokinetic(sys::System{T},opt::Options) where T
 
 Performs a MD simulation with an isokinetic bath. 
 

src/md-langevin.jl

@@ -1,5 +1,5 @@
 """
-  md_langevin(sys::System{T},opt::Options) where T
+    md_langevin(sys::System{T},opt::Options) where T
 
 Performs a MD simulation with a Langevin bath. 
 

src/md-simple.jl

@@ -1,5 +1,5 @@
 """
-  md(sys::System{T},opt::Options) where T
+    md(sys::System{T},opt::Options) where T
 
 Performs a simple MD simulation.
 

src/minimize.jl

@@ -1,5 +1,5 @@
 """
-  minimize!(sys::System{T},opt::Options)
+    minimize!(sys::System{T},opt::Options)
 
 Minimizes the potential energy of `sys.x0`. Modifies `sys.x0`.
 

src/potential.jl

@@ -1,5 +1,5 @@
 """
-  potential(x::Vector{T},sys::System{T},opt::Options) where T
+    potential(x::Vector{T},sys::System{T},opt::Options) where T
 
 Function that computes the potential energy given a vector of positions, `x`.
 

src/printxyz.jl

@@ -1,5 +1,5 @@
 """
-  printxyz(time,x,v,sys,traj_file_buffer,vel_file_buffer)
+    printxyz(time,x,v,sys,traj_file_buffer,vel_file_buffer)
 
 Subroutine that writes the current coordinates *and* velocities to 
 output files, previously opened in respective buffers.
@@ -26,7 +26,7 @@ end
 
 
 """
-  printxyz(time,x,sys,traj_file_buffer)
+    printxyz(time,x,sys,traj_file_buffer)
 
 Subroutine that writes the current coordinates (or velocities) to 
 output files, previously opened in respective buffers.
@@ -47,7 +47,7 @@ function printxyz(time, x, sys, traj_file_buffer)
 end
 
 """
-  printxyz(x,sys,file::String) 
+    printxyz(x,sys,file::String) 
 
 Prints one set of coordinates (or velocities), given in `x` to file `file`. Overwrites
 the file.  

src/radial_distribution.jl

@@ -1,10 +1,10 @@
 """
-  radial_distribution(
-      sys::System{T},
-      trajfile::String;
-      dmax::Float64=10.,
-      nbins::Int=100
-  ) where T
+    radial_distribution(
+        sys::System{T},
+        trajfile::String;
+        dmax::Float64=10.,
+        nbins::Int=100
+    ) where T
 
 Computes the g(r). If `T=Point3D` the system will be read as three-dimensional.
 

src/remove_drift.jl

@@ -1,5 +1,5 @@
 """
-  remove_drift!(v)
+    remove_drift!(v)
 
 Removes possible drift from velocities.