Merge pull request #39 from lucaskorol21/version-joss-rev

Version joss rev -  non-GUI unit tests run through github actions

.github/workflows/go-rxr-tests.yml

@@ -0,0 +1,50 @@
+# This workflow is designed to set up the necessary Python environment, install dependencies,
+# and run the full suite of non-GUI unit tests for the GO-RXR project. It ensures that the code is 
+# consistently tested on Ubuntu 22.04 with Python 3.10.12. For further details, see:
+# https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
+
+name: GO-RXR Tests
+
+on:
+  push:
+    branches: ["main", "version-joss-rev"]
+  pull_request:
+    branches: ["main", "version-joss-rev"]
+
+permissions:
+  contents: read
+
+jobs:
+  test:
+    runs-on: ubuntu-22.04
+
+    steps:
+    - name: Check out the code
+      uses: actions/checkout@v3
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.10.12'
+
+    - name: Install dependencies
+      run: |
+        pip install --upgrade pip setuptools
+        pip install -r requirements.txt
+
+    - name: Install PyQt5 Dependencies
+      run: |
+        sudo apt-get install -y pyqt5-dev libqt5multimedia5-plugins
+
+    - name: Install Reflectivity Package
+      run: |
+        python setup_reflectivity.py install
+
+    - name: Run tests
+      run: |
+        python -m unittest discover -s TESTS -p "test_data_fitting.py"
+        python -m unittest discover -s TESTS -p "test_data_structure.py"
+        python -m unittest discover -s TESTS -p "test_density.py"
+        python -m unittest discover -s TESTS -p "test_material_model.py"
+        python -m unittest discover -s TESTS -p "test_material_structure.py"
+        python -m unittest discover -s TESTS -p "test_reflectivity.py"

GUI_GO.py

@@ -10960,10 +10960,12 @@ def checkbracket(myStr):
         return True
 """
 
-def checkscript(sample, fname=''):
+def checkscript(sample, fname='', testing=False):
 
     if fname == '':
         script = os.getcwd() + '/DATA/default_script.txt'
+    elif testing:
+        script = fname
     else:
         script = os.getcwd() + fname
     #script = fname

README.md

@@ -313,3 +313,8 @@ The GO-RXR software package has been utilized for analyzing the RXR data in the
 If issues feel free to contact me at [email protected].
 
 
+
+
+# Test workflow trigger
+
+

TESTS/run_all_tests.py

@@ -7,6 +7,8 @@
 # Add the parent directory to the system path
 sys.path.append(parent_dir)
 
+from UTILS import ROOT_DIR
+
 def load_tests_from_file(test_file):
     # Load the test suite from the given file
     loader = unittest.TestLoader()
@@ -30,5 +32,6 @@ def discover_and_run_tests(test_dir):
     print(f"Total tests run: {tot_test}")
 
 if __name__ == "__main__":
-    test_dir = "."
+
+    test_dir = ROOT_DIR + '/TESTS'
     discover_and_run_tests(test_dir)