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Add uncalibrateImage to PhotoCalib
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parejkoj committed Oct 18, 2024
1 parent fda6b12 commit 34d796e
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14 changes: 14 additions & 0 deletions include/lsst/afw/image/PhotoCalib.h
Original file line number Diff line number Diff line change
Expand Up @@ -350,6 +350,20 @@ class PhotoCalib final : public table::io::PersistableFacade<PhotoCalib>, public
MaskedImage<float> calibrateImage(MaskedImage<float> const &maskedImage,
bool includeScaleUncertainty = true) const;

/**
* Return a un-calibrated image, with pixel values in ADU (or whatever the original input to
* this photoCalib was).
*
* Mask pixels are propagated directly from the input image.
*
* @param maskedImage The masked image with pixel units of nJy to uncalibrate.
* @param includeScaleUncertainty Include the uncertainty on the calibration in the resulting variance?
*
* @return The uncalibrated masked image.
*/
MaskedImage<float> uncalibrateImage(MaskedImage<float> const &maskedImage,
bool includeScaleUncertainty = true) const;

/**
* Return a flux calibrated catalog, with new `_flux`, `_fluxErr`, `_mag`, and `_magErr` fields.
*
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2 changes: 2 additions & 0 deletions python/lsst/afw/image/_photoCalib.cc
Original file line number Diff line number Diff line change
Expand Up @@ -171,6 +171,8 @@ void declarePhotoCalib(lsst::cpputils::python::WrapperCollection &wrappers) {

cls.def("calibrateImage", &PhotoCalib::calibrateImage, "maskedImage"_a,
"includeScaleUncertainty"_a = true);
cls.def("uncalibrateImage", &PhotoCalib::uncalibrateImage, "maskedImage"_a,
"includeScaleUncertainty"_a = true);

cls.def("calibrateCatalog",
py::overload_cast<afw::table::SourceCatalog const &,
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47 changes: 47 additions & 0 deletions src/image/PhotoCalib.cc
Original file line number Diff line number Diff line change
Expand Up @@ -94,6 +94,31 @@ void toNanojanskyVariance(ndarray::Array<float const, 2, 1> const &instFlux,
(eigenInstFluxVar / eigenInstFlux.square() + (scaleErr / eigenFlux * eigenInstFlux).square());
}

/**
* Compute the variance of an array of fluxes, for calculations on nJy calibrated MaskedImages.
*
* MaskedImage stores the variance instead of the standard deviation, so we can skip a sqrt().
* Usage in calibrateImage() is to compute instFlux (ADU) directly, so that the calibration scale is
* implictly `flux/instFlux` (and thus not passed as an argument).
*
* @param flux[in] The flux in nJy.
* @param fluxVar[in] The variance of the fluxes.
* @param scaleErr[in] The error on the calibration scale.
* @param instFlux[in] The instrumental fluxes calculated from the fluxes.
* @param out[out] The output array to fill with the instrumental variance values.
*/
void fromNanojanskyVariance(ndarray::Array<float const, 2, 1> const &flux,
ndarray::Array<float const, 2, 1> const &fluxVar, float scaleErr,
ndarray::Array<float const, 2, 1> const &instFlux,
ndarray::Array<float, 2, 1> out) {
auto eigenFlux = ndarray::asEigen<Eigen::ArrayXpr>(flux);
auto eigenFluxVar = ndarray::asEigen<Eigen::ArrayXpr>(fluxVar);
auto eigenInstFlux = ndarray::asEigen<Eigen::ArrayXpr>(instFlux);
auto eigenOut = ndarray::asEigen<Eigen::ArrayXpr>(out);
eigenOut = (eigenFluxVar / eigenFlux.square() - (scaleErr / eigenFlux * eigenInstFlux).square()) *
eigenInstFlux.square();
}

double toMagnitudeErr(double instFlux, double instFluxErr, double scale, double scaleErr) {
return 2.5 / std::log(10.0) * hypot(instFluxErr / instFlux, scaleErr / scale);
}
Expand Down Expand Up @@ -280,6 +305,28 @@ MaskedImage<float> PhotoCalib::calibrateImage(MaskedImage<float> const &maskedIm
return result;
}

MaskedImage<float> PhotoCalib::uncalibrateImage(MaskedImage<float> const &maskedImage,
bool includeScaleUncertainty) const {
// Deep copy construct, as we're mutiplying in-place.
auto result = MaskedImage<float>(maskedImage, true);

if (_isConstant) {
*(result.getImage()) /= _calibrationMean;
} else {
_calibration->divideImage(*(result.getImage()), true); // only in the overlap region
}
if (includeScaleUncertainty) {
fromNanojanskyVariance(maskedImage.getImage()->getArray(), maskedImage.getVariance()->getArray(),
_calibrationErr, result.getImage()->getArray(),
result.getVariance()->getArray());
} else {
fromNanojanskyVariance(maskedImage.getImage()->getArray(), maskedImage.getVariance()->getArray(), 0,
result.getImage()->getArray(), result.getVariance()->getArray());
}

return result;
}

afw::table::SourceCatalog PhotoCalib::calibrateCatalog(afw::table::SourceCatalog const &catalog,
std::vector<std::string> const &instFluxFields) const {
auto const &inSchema = catalog.getSchema();
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18 changes: 18 additions & 0 deletions tests/test_photoCalib.py
Original file line number Diff line number Diff line change
Expand Up @@ -594,11 +594,17 @@ def testCalibrateImageConstant(self):
photoCalib = lsst.afw.image.PhotoCalib(self.calibration, self.calibrationErr)
result = photoCalib.calibrateImage(maskedImage)
self.assertMaskedImagesAlmostEqual(expect, result)
uncalibrated = photoCalib.uncalibrateImage(result)
# High rtol because our specific choice of calib values results in a
# very-close-to-but-not-1 value, which results in poor round-tripping.
self.assertMaskedImagesAlmostEqual(maskedImage, uncalibrated, rtol=4e-2)

# same test, but without using the calibration error
expect = makeCalibratedMaskedImageNoCalibrationError(image, mask, variance, outImage)
result = photoCalib.calibrateImage(maskedImage, includeScaleUncertainty=False)
self.assertMaskedImagesAlmostEqual(expect, result)
uncalibrated = photoCalib.uncalibrateImage(result, includeScaleUncertainty=False)
self.assertMaskedImagesAlmostEqual(maskedImage, uncalibrated)

def testCalibrateImageNonConstant(self):
"""Test a spatially-varying calibration."""
Expand All @@ -612,11 +618,17 @@ def testCalibrateImageNonConstant(self):
photoCalib = lsst.afw.image.PhotoCalib(self.linearXCalibration, self.calibrationErr)
result = photoCalib.calibrateImage(maskedImage)
self.assertMaskedImagesAlmostEqual(expect, result)
uncalibrated = photoCalib.uncalibrateImage(result)
# High rtol because our specific choice of calib values results in a
# very-close-to-but-not-1 value, which results in poor round-tripping.
self.assertMaskedImagesAlmostEqual(maskedImage, uncalibrated, rtol=4e-2)

# same test, but without using the calibration error
expect = makeCalibratedMaskedImageNoCalibrationError(image, mask, variance, outImage)
result = photoCalib.calibrateImage(maskedImage, includeScaleUncertainty=False)
self.assertMaskedImagesAlmostEqual(expect, result)
uncalibrated = photoCalib.uncalibrateImage(result, includeScaleUncertainty=False)
self.assertMaskedImagesAlmostEqual(maskedImage, uncalibrated)

def testCalibrateImageNonConstantSubimage(self):
"""Test a non-constant calibration on a sub-image, to ensure we're
Expand All @@ -634,11 +646,17 @@ def testCalibrateImageNonConstantSubimage(self):
photoCalib = lsst.afw.image.PhotoCalib(self.linearXCalibration, self.calibrationErr)
result = photoCalib.calibrateImage(subImage)
self.assertMaskedImagesAlmostEqual(expect.subset(subBox), result)
uncalibrated = photoCalib.uncalibrateImage(result)
# High rtol because our specific choice of calib values results in a
# very-close-to-but-not-1 value, which results in poor round-tripping.
self.assertMaskedImagesAlmostEqual(subImage, uncalibrated, rtol=4e-3)

# same test, but without using the calibration error
expect = makeCalibratedMaskedImageNoCalibrationError(image, mask, variance, outImage)
result = photoCalib.calibrateImage(maskedImage, includeScaleUncertainty=False)
self.assertMaskedImagesAlmostEqual(expect, result)
uncalibrated = photoCalib.uncalibrateImage(result, includeScaleUncertainty=False)
self.assertMaskedImagesAlmostEqual(subImage, uncalibrated)

def testNonPositiveMeans(self):
# no negative calibrations
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