rename to fasten; v0.1.11

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name    = "fasten"
-version = "0.1.10"
+version = "0.1.11"
 authors = ["Lee Katz <[email protected]>"]
 #license-file  = "LICENSE"
 license       = "MIT"

tests/fasten_trim.sh

@@ -3,21 +3,21 @@
 set -e
 
 INPUT=testdata/four_reads.pe.fastq;
-reads_not_trimmed=$(./target/debug/fasten_trimmer < $INPUT )
+reads_not_trimmed=$(./target/debug/fasten_trim < $INPUT )
 original_reads=$(cat $INPUT)
 if [ "$reads_not_trimmed" != "$original_reads" ]; then
   echo "ERROR while not trimming reads"
   exit 1
 fi
 
-onebase=$(./target/debug/fasten_trimmer --first-base 3 --last-base 4 < testdata/four_reads.pe.fastq | perl -lane 'print if($i++ % 4 == 1);' | paste -sd'_')
+onebase=$(./target/debug/fasten_trim --first-base 3 --last-base 4 < testdata/four_reads.pe.fastq | perl -lane 'print if($i++ % 4 == 1);' | paste -sd'_')
 shouldbe="T_T_G_A_C_A_C_A"
 if [ "$onebase" != "$shouldbe" ]; then
   echo "ERROR trimming to the third base"
   exit 1
 fi
 
-last_read_length=$(./target/debug/fasten_trimmer --first-base 53 < testdata/four_reads.pe.fastq | ./target/debug/fasten_metrics --each-read | tail -n 1 | cut -f 2)
+last_read_length=$(./target/debug/fasten_trim --first-base 53 < testdata/four_reads.pe.fastq | ./target/debug/fasten_metrics --each-read | tail -n 1 | cut -f 2)
 if [ "$last_read_length" -ne 47 ]; then
   echo "ERROR trimming to the last 47 bp of the reads"
   exit 1