Sn lab ephys JL #4
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.DS_Store
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behavior/.DS_Store
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metagen_tools/.DS_Store
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| function output = tablegen (basepath2) | |||
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For cohesion with rest of repo, reference to basepath should be 'basepath'. Remove the '2'.
| file_struct = dir(fullfile(basepath2,'*.avi')); | ||
| %remove hidden files | ||
| file_struct = file_struct(~strncmp({file_struct.name}, '.', 1)); | ||
| % Extract base name |
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you can use basenameFromBasepath or fileparts
| timestamps = cellfun(@(x) str2double(x),timestamps,'UniformOutput',false); | ||
| [~, sortedIndices] = sort( [timestamps{:}]); | ||
| file_struct=file_struct(sortedIndices); | ||
| subid=[]; |
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consider a blank csv with headers so you don't have to initialize all variable names here.
| none=[]; | ||
| for i=1:length(sortedIndices) | ||
| %nones and constant columns | ||
| maze_length_cm=[maze_length_cm;39]; |
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avoid hard-coded variables
| basename=[basename;string(File_name)]; | ||
| %exposure and condition | ||
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| if contains(basename,'pretest') |
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Make 68 - 104 adaptable for different behavioral paradigms. Dates on video files can be used for exposure calculation. Use recursive approach to get all videos from subject folder.
New tools for metafile generation and timestamps