Test with upstream linkml #4
Workflow file for this run
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| name: Test with upstream linkml | |
| on: | |
| pull_request_review: | |
| types: [ submitted ] | |
| workflow_dispatch: | |
| jobs: | |
| test_upstream: | |
| if: github.event_name == 'workflow_dispatch' || github.event.review.state == 'APPROVED' | |
| strategy: | |
| matrix: | |
| os: [ ubuntu-latest, windows-latest ] | |
| python-version: [ "3.8", "3.9", "3.10", "3.11" ] | |
| pydantic-version: [ "1", "2" ] | |
| exclude: | |
| - os: windows-latest | |
| python-version: "3.8" | |
| - os: windows-latest | |
| pydantic-version: "1" | |
| - python-version: "3.8" | |
| pydantic-version: "1" | |
| - python-version: "3.9" | |
| pydantic-version: "1" | |
| - python-version: "3.10" | |
| pydantic-version: "1" | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: checkout upstream | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: linkml/linkml | |
| path: linkml | |
| ref: main | |
| fetch-depth: 0 | |
| - name: checkout linkml-runtime | |
| uses: actions/checkout@v4 | |
| with: | |
| # don't specify repository like this or else we won't get pull request branches correctly | |
| # repository: linkml/linkml-runtime | |
| path: linkml-runtime | |
| fetch-depth: 0 | |
| - name: set up python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: install poetry | |
| uses: snok/install-poetry@v1 | |
| with: | |
| virtualenvs-create: true | |
| virtualenvs-in-project: true | |
| - name: Load cached venv | |
| id: cached-poetry-dependencies | |
| uses: actions/cache@v3 | |
| with: | |
| path: linkml/.venv | |
| key: venv-${{ matrix.python-version }}-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }} | |
| # use correct pydantic version | |
| - name: install pydantic | |
| working-directory: linkml | |
| run: poetry add pydantic@^${{ matrix.pydantic-version }} | |
| - name: remove potentially cached linkml-runtime version | |
| working-directory: linkml | |
| run: poetry run pip uninstall linkml-runtime -y | |
| - name: get linkml-runtime short hash | |
| working-directory: linkml-runtime | |
| run: | | |
| LINKML_RUNTIME_COMMIT=$(git rev-parse --short HEAD) | |
| echo "LINKML_RUNTIME_COMMIT=$LINKML_RUNTIME_COMMIT" >> "$GITHUB_ENV" | |
| # install the local version of linkml-runtime: | |
| # we do this vs. pip --force-reinstall so that we keep linkml's locked deps | |
| # and simulate what the lockfile will be after merging and relocking. | |
| # we override the linkml-runtime version here according to poetry-dynamic-versioning: | |
| # "The dynamic version is not available during poetry run or poetry shell because of a Poetry design choice that prevents the plugin from cleaning up after itself." | |
| # and since linkml depends on a specific version of linkml-runtime, this would always fail | |
| - name: add linkml-runtime to linkml's venv | |
| working-directory: linkml | |
| run: | | |
| poetry self add "poetry-dynamic-versioning[plugin]" | |
| POETRY_DYNAMIC_VERSIONING_OVERRIDE="linkml-runtime = 1.99.0+${{ env.LINKML_RUNTIME_COMMIT }}" poetry add ../linkml-runtime | |
| # note that we run the installation step always, even if we restore a venv, | |
| # the cache will restore the old version of linkml-runtime, but the lockfile | |
| # will only store the directory dependency (and thus will reinstall it) | |
| # the cache will still speedup the rest of the installation | |
| - name: install linkml | |
| working-directory: linkml | |
| run: poetry install --no-interaction --no-root -E tests | |
| - name: print linkml-runtime version | |
| working-directory: linkml | |
| run: poetry run python -c 'import linkml_runtime; from importlib.metadata import version; print(linkml_runtime.__file__); print(version("linkml_runtime"))' | |
| - name: run tests | |
| working-directory: linkml | |
| run: poetry run python -m pytest --with-slow | |