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@lincbrain

LINC: Large-scale Imaging of Neural Circuits

👋 Welcome to LINC BRAIN!

The center for Large-scale Imaging of Neural Circuits (LINC) (PIs: Haber, Hillman, Yendiki) is funded by the NIH BRAIN Initiative CONNECTS program. Its goal is to develop novel technologies for imaging brain connections down to the microscopic scale, and deploy these technologies to image cortico-subcortical projections that are relevant to deep brain stimulation for motor and psychiatric disorders.

The LINC project is a collaboration between 8 institutions: Brigham and Women’s Hospital (PI: Fox), Columbia University (PI: Hillman), Harvard University (PI: Lichtman), Massachusetts General Hospital (PI: Yendiki), Massachusetts Institute of Technology (PI: Ghosh), University College London (PI: Walsh, co-PI: Lee), University of Rochester (PI: Haber), and Weill Cornell Medicine (PI: Wu).

In this GitHub organization are the source code, configuration, and documentation for the LINC Cloud Platform, which is used by the LINC team to share data and run analysis. As analysis methods become available they will be published here.

Quick Links

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  1. linc-convert Public

    Data conversion scripts for the LINC project

    Python 1 3

  2. linc-pipelines Public

    Top-level image processing streams for LINC data

    Shell 2

  3. Fibers.jl Public

    Julia package for reconstructing fiber trajectories from multi-scale, multi-modal imaging data

    Julia 16 3

  4. linc-archive Public

    Forked from dandi/dandi-archive

    LINC API server and Web app

    Python

  5. webknossos Public

    Forked from scalableminds/webknossos

    Visualize, share and annotate your large 3D images online

    TypeScript

  6. linc-archive-infrastructure Public

    Forked from dandi/dandi-infrastructure

    LINC Archive Infrastructure

    HCL

Repositories

Showing 10 of 24 repositories
  • 0 MIT 1 0 2 Updated Dec 19, 2024
  • linc-archive Public Forked from dandi/dandi-archive

    LINC API server and Web app

    Python 0 13 17 4 Updated Dec 15, 2024
  • webknossos Public Forked from scalableminds/webknossos

    Visualize, share and annotate your large 3D images online

    TypeScript 0 AGPL-3.0 26 3 2 Updated Dec 10, 2024
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    TypeScript 1 Apache-2.0 312 1 5 Updated Dec 5, 2024
  • handbook Public Forked from dandi/handbook

    Handbook for interacting with the DANDI archive.

    HTML 0 12 0 0 Updated Nov 27, 2024
  • linc-convert Public

    Data conversion scripts for the LINC project

    Python 1 Apache-2.0 3 10 5 Updated Nov 26, 2024
  • linc-docs Public

    LINC Documentation

    1 6 5 5 Updated Nov 21, 2024
  • linc-cli Public archive Forked from dandi/dandi-cli

    LINC Client to facilitate common operations

    Python 0 Apache-2.0 28 0 0 Updated Nov 19, 2024
  • dandi-cli Public archive Forked from dandi/dandi-cli

    DANDI command line client to facilitate common operations

    Python 0 Apache-2.0 28 0 0 Updated Nov 15, 2024
  • sandbox-dandi-infrastructure Public Forked from dandi/dandi-infrastructure

    Sandbox DANDI infrastructure repository

    HCL 0 Apache-2.0 6 0 0 Updated Nov 5, 2024