Moving Gemfile to top level

.github/workflows/jekyll.yml

@@ -44,7 +44,7 @@ jobs:
         uses: actions/configure-pages@v5
       - name: Build with Jekyll
         # Outputs to the './_site' directory by default
-        run: bundle exec jekyll build --baseurl "/docs"
+        run: bundle exec jekyll build 
         env:
           JEKYLL_ENV: production
       - name: Upload artifact

docs/Gemfile → Gemfile

@@ -12,7 +12,7 @@ gem "jekyll", "~> 4.3.3"
 gem "minima", "~> 2.5"
 # If you want to use GitHub Pages, remove the "gem "jekyll"" above and
 # uncomment the line below. To upgrade, run `bundle update github-pages`.
-# gem "github-pages", group: :jekyll_plugins
+#gem "github-pages", group: :jekyll_plugins
 # If you have any plugins, put them here!
 group :jekyll_plugins do
   gem "jekyll-feed", "~> 0.12"

docs/_config.yml

@@ -6,8 +6,9 @@ description: >- # this means to ignore newlines until "baseurl:"
   Write an awesome description for your new site here. You can edit this
   line in _config.yml. It will appear in your document head meta (for
   Google search results) and in your feed.xml site description.
-baseurl: "" # the subpath of your site, e.g. /blog
-url: "https://bokulich-lab.github.io/nf-ducken" # the base hostname & protocol for your site, e.g. http://example.com
+baseurl: "docs/" # the subpath of your site, e.g. /blog
+destination: docs/_site
+#url: "https://bokulich-lab.github.io/nf-ducken" # the base hostname & protocol for your site, e.g. http://example.com
 twitter_username: linathekim
 github_username:  lina-kim