Merge pull request #8 from limbus-medtec/OPS-2945

OPS-2945 reactivated IDT UDI 8nt config
limbus-medtec · Aug 1, 2021 · 1bca0c0 · 1bca0c0
2 parents e63c2f7 + 6ba5c39
commit 1bca0c0
Showing 1 changed file with 9 additions and 7 deletions.
diff --git a/README.md b/README.md
@@ -46,18 +46,20 @@ Then, restart IEM.
 
 ## Available index adapters
 
-| Name                                                         | Manufacturer                                                 | Length/ nt | SamplePrepKit          | IndexKits                                                    |
-| ------------------------------------------------------------ | ------------------------------------------------------------ | ---------- | ---------------------- | ------------------------------------------------------------ |
-| [IDX96](https://www.nimagen.com/shop/products/idx96-u01/index-primer-plate-and-nbsp-u01-96-unique-dual-indexes) | [Nimagen](https://www.nimagen.com/)    | 10         | `Nimagen UDI`          | `Nimagen IDX96-U01`<br />`Nimagen IDX96-U02v2`<br />`Nimagen IDX96-U03`<br />`Nimagen IDX96-U05`<br />`Nimagen IDX96-U06`  |
-| [IDX96](https://www.nimagen.com/shop/products/idx96-u01/index-primer-plate-and-nbsp-u01-96-unique-dual-indexes) | [Nimagen](https://www.nimagen.com/)   | 8*         | `Nimagen UDI`          | `Nimagen IDX96-U01-8nt`<br />`Nimagen IDX96-U02v2-8nt`<br />`Nimagen IDX96-U03-8nt`<br />`Nimagen IDX96-U05-8nt`<br />`Nimagen IDX96-U06-8nt`   |
-| [IDX96](https://www.nimagen.com/shop/products/idx96-u01/index-primer-plate-and-nbsp-u01-96-unique-dual-indexes) | [Nimagen](https://www.nimagen.com/)    | 8*         | `Nimagen UDI`          | `Nimagen IDX96-U01-RC-8nt`<br />`Nimagen IDX96-U02v2-RC-8nt`<br />`Nimagen IDX96-U03-RC-8nt`<br />`Nimagen IDX96-U05-RC-8nt`<br />`Nimagen IDX96-U06-RC-8nt` |
-| [16-UDI](https://www.twistbioscience.com/resources/twist-universal-adapter-system) | [Twist Bioscience](https://www.twistbioscience.com/)         | 10         | `Twist Enrichment UDI` | `Twist 16 UDI`                                               |
-| [96-UDI](https://www.twistbioscience.com/resources/twist-universal-adapter-system) | [Twist Bioscience](https://www.twistbioscience.com/)         | 10         | `Twist Enrichment UDI` | `Twist 384 UDI`<br />`Twist 96 UDI Plate A`<br />`Twist 96 UDI Plate B`<br />`Twist 96 UDI Plate C`<br />`Twist 96 UDI Plate D` |
+| Name                                                         | Manufacturer                                         | Length/ nt | SamplePrepKit          | IndexKits                                                    |
+| ------------------------------------------------------------ | ---------------------------------------------------- | ---------- | ---------------------- | ------------------------------------------------------------ |
+| [IDX96](https://www.nimagen.com/shop/products/idx96-u01/index-primer-plate-and-nbsp-u01-96-unique-dual-indexes) | [Nimagen](https://www.nimagen.com/)                  | 10         | `Nimagen UDI`          | `Nimagen IDX96-U01`<br />`Nimagen IDX96-U02v2`<br />`Nimagen IDX96-U03`<br />`Nimagen IDX96-U05`<br />`Nimagen IDX96-U06` |
+| [IDX96](https://www.nimagen.com/shop/products/idx96-u01/index-primer-plate-and-nbsp-u01-96-unique-dual-indexes) | [Nimagen](https://www.nimagen.com/)                  | 8*         | `Nimagen UDI`          | `Nimagen IDX96-U01-8nt`<br />`Nimagen IDX96-U02v2-8nt`<br />`Nimagen IDX96-U03-8nt`<br />`Nimagen IDX96-U05-8nt`<br />`Nimagen IDX96-U06-8nt` |
+| [IDX96](https://www.nimagen.com/shop/products/idx96-u01/index-primer-plate-and-nbsp-u01-96-unique-dual-indexes) | [Nimagen](https://www.nimagen.com/)                  | 8*         | `Nimagen UDI`          | `Nimagen IDX96-U01-RC-8nt`<br />`Nimagen IDX96-U02v2-RC-8nt`<br />`Nimagen IDX96-U03-RC-8nt`<br />`Nimagen IDX96-U05-RC-8nt`<br />`Nimagen IDX96-U06-RC-8nt` |
+| [16-UDI](https://www.twistbioscience.com/resources/twist-universal-adapter-system) | [Twist Bioscience](https://www.twistbioscience.com/) | 10         | `Twist Enrichment UDI` | `Twist 16 UDI`                                               |
+| [96-UDI](https://www.twistbioscience.com/resources/twist-universal-adapter-system) | [Twist Bioscience](https://www.twistbioscience.com/) | 10         | `Twist Enrichment UDI` | `Twist 384 UDI`<br />`Twist 96 UDI Plate A`<br />`Twist 96 UDI Plate B`<br />`Twist 96 UDI Plate C`<br />`Twist 96 UDI Plate D` |
+| [IDT 8nt](https://eu.idtdna.com/pages/products/next-generation-sequencing/adapters/xgen-dual-index-umi-adapters-tech-access) | [IDT](https://eu.idtdna.com/pages)                   | 8          | `IDT UDI 8nt UMI`      | `IDT UDI 8nt UMI Set A`<br />`IDT UDI 8nt UMI Set B`<br />`IDT UDI 8nt UMI Set C`<br />`IDT UDI 8nt UMI Set D`<br />`IDT UDI 8nt UMI 384 Indices` |
 
 *Some Nimagen amplicon designs require to use at least 151 cycles for Read 1 and Read 2. This is not compatible with 10nt 
 indices on most devices. Nimagen states, however, that their 10nt index plates can be used as 8nt indices. 
 For convenience, we created configurations with 8nt from those index plates. Please note that you must
 select different configurations depending on your device, for example:
+
 * `Nimagen IDX96-U01-8nt` for the Forward Strand Workflow implemented in MiSeq and NovaSeq (v1.0 reagents),
 * `Nimagen IDX96-U01-RC-8nt` for the Reverse Complement Workflow implemented in NextSeq and NovaSeq (v1.5 reagents).