v2.0.5.9044

* ci: Add GitHub Action test-coverage * docs: ReadMe, Add codecov badge * docs: ReadMe, Add codefactor badge
leppott · Dec 26, 2020 · d2bff4d · d2bff4d
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diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -0,0 +1,48 @@
+on:
+  push:
+    branches:
+      - main
+      - master
+  pull_request:
+    branches:
+      - main
+      - master
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: macOS-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+
+      - uses: r-lib/actions/setup-pandoc@v1
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        uses: actions/cache@v2
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install dependencies
+        run: |
+          install.packages(c("remotes"))
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("covr")
+        shell: Rscript {0}
+
+      - name: Test coverage
+        run: covr::codecov()
+        shell: Rscript {0}
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: ContDataQC
 Title: Quality Control (QC) of Continous Monitoring Data
-Version: 2.0.5.9043
+Version: 2.0.5.9044
 Authors@R: c(
 	person("Erik W", "Leppo", email="[email protected]",role=c("aut","cre")),
 	person("Ann","Roseberry Lincoln", role="ctb"),

diff --git a/NEWS b/NEWS
@@ -3,7 +3,7 @@ NEWS-ContDataQC
 
 <!-- NEWS.md is generated from NEWS.Rmd. Please edit that file -->
 
-    #> Last Update: 2020-12-25 20:00:48
+    #> Last Update: 2020-12-25 20:07:33
 
 # Planned Updates
 
@@ -37,6 +37,14 @@ NEWS-ContDataQC
 
 # Version History
 
+## v2.0.5.9044
+
+2020-12-25
+
+  - ci: Add GitHub Action test-coverage
+  - docs: ReadMe, Add codecov badge
+  - docs: ReadMe, Add codefactor badge
+
 ## v2.0.5.9043
 
 2020-12-25

diff --git a/NEWS.rmd b/NEWS.rmd
@@ -46,6 +46,13 @@ cat(paste0("Last Update: ",Sys.time()))
 
 # Version History
 
+## v2.0.5.9044
+2020-12-25
+
+* ci: Add GitHub Action test-coverage
+* docs: ReadMe, Add codecov badge
+* docs: ReadMe, Add codefactor badge
+
 ## v2.0.5.9043
 2020-12-25
 

diff --git a/README.Rmd b/README.Rmd
@@ -23,9 +23,11 @@ Quality control checks on continuous data.  Example data is from a HOBO data log
 Badges
 -----------
 [![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/leppott/ContDataQC/graphs/commit-activity)
-[![](https://img.shields.io/badge/lifecycle-stable-green.svg)](https://www.tidyverse.org/lifecycle/#stable)
+[![lifecycle](https://img.shields.io/badge/lifecycle-stable-green.svg)](https://www.tidyverse.org/lifecycle/#stable)
 [![GitHub license](https://img.shields.io/github/license/leppott/ContDataQC.svg)](https://github.com/leppott/ContDataQC/blob/master/LICENSE)
 
+[![CodeFactor](https://www.codefactor.io/repository/github/leppott/ContDataQC/badge)](https://www.codefactor.io/repository/github/leppott/ContDataQC)
+[![codecov](https://codecov.io/gh/leppott/ContDataQC/branch/master/graph/badge.svg)](https://codecov.io/gh/leppott/ContDataQC)
 [![R-CMD-check](https://github.com/leppott/ContDataQC/workflows/R-CMD-check/badge.svg)](https://github.com/leppott/ContDataQC/actions)
 
 [![GitHub issues](https://img.shields.io/github/issues/leppott/ContDataQC.svg)](https://GitHub.com/leppott/ContDataQC/issues/)

diff --git a/README.md b/README.md
@@ -3,7 +3,7 @@ README-ContDataQC
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-    #> Last Update: 2020-12-25 19:59:34
+    #> Last Update: 2020-12-25 20:07:06
 
 # ContDataQC
 
@@ -13,10 +13,12 @@ data logger with 30 minute intervals.
 ## Badges
 
 [![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/leppott/ContDataQC/graphs/commit-activity)
-[![](https://img.shields.io/badge/lifecycle-stable-green.svg)](https://www.tidyverse.org/lifecycle/#stable)
+[![lifecycle](https://img.shields.io/badge/lifecycle-stable-green.svg)](https://www.tidyverse.org/lifecycle/#stable)
 [![GitHub
 license](https://img.shields.io/github/license/leppott/ContDataQC.svg)](https://github.com/leppott/ContDataQC/blob/master/LICENSE)
 
+[![CodeFactor](https://www.codefactor.io/repository/github/leppott/ContDataQC/badge)](https://www.codefactor.io/repository/github/leppott/ContDataQC)
+[![codecov](https://codecov.io/gh/leppott/ContDataQC/branch/master/graph/badge.svg)](https://codecov.io/gh/leppott/ContDataQC)
 [![R-CMD-check](https://github.com/leppott/ContDataQC/workflows/R-CMD-check/badge.svg)](https://github.com/leppott/ContDataQC/actions)
 
 [![GitHub

diff --git a/inst/extdata/ContDataQC_LibraryCreation.Rmd b/inst/extdata/ContDataQC_LibraryCreation.Rmd
@@ -219,7 +219,7 @@ Can make some badges dynamic, static ones below
 [![Github all releases](https://img.shields.io/github/downloads/leppott/MBSStools/total.svg)](https://GitHub.com/leppott/MBSStools/releases/)
 
 ```{r}
-pkg_GH <- "leppott/BioMonTools"
+pkg_GH <- "leppott/ContDataQC"
 pkg_lic <- "MIT"
 
 # GitHub Action, CI

diff --git a/inst/extdata/ContDataQC_LibraryCreation.nb.html b/inst/extdata/ContDataQC_LibraryCreation.nb.html