v2.0.7.9041

* refactor: Update thresholds display table + DO Spike + Add DO Adj, DO % Sat, and Salinity
leppott · Dec 23, 2024 · 175952e · 175952e
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commit 175952e
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Showing 4 changed files with 141 additions and 5 deletions.
diff --git a/NEWS.rmd b/NEWS.rmd
@@ -21,6 +21,13 @@ cat(paste0("Last Update: ",Sys.time()))
 
 # Version History
 
+## v2.0.7.9041
+2024-12-23
+
+* refactor: Update thresholds display table
+    + DO Spike
+    + Add DO Adj, DO % Sat, and Salinity
+
 ## v2.0.7.9040
 2024-12-23
 

diff --git a/inst/shiny-examples/ContDataQC/global.R b/inst/shiny-examples/ContDataQC/global.R
@@ -23,7 +23,7 @@ library(shinyalert)
 # Sys.setenv(PATH = paste(Sys.getenv("PATH"), "C:\\Rtools\\bin", sep = ";"))
 
 # Version Number
-version <- "2.0.7.9040"
+version <- "2.0.7.9041"
 
 #Maximum individual file size that can be uploaded is 70 MB
 options(shiny.maxRequestSize = 70 * 1024^2)

diff --git a/inst/shiny-examples/ContDataQC/rmd/tables/App_Information_Tables.xlsx b/inst/shiny-examples/ContDataQC/rmd/tables/App_Information_Tables.xlsx
diff --git a/inst/shiny-examples/ContDataQC/www/RMD_HTML/App_3c1_QCThresh_Defaults.html b/inst/shiny-examples/ContDataQC/www/RMD_HTML/App_3c1_QCThresh_Defaults.html
@@ -10,7 +10,7 @@ <h1>Default QC flag test thresholds</h1>
 following four ‘flag’ tests.</p>
 <div id="flag-test-descriptions" class="section level3">
 <h3>Flag test descriptions</h3>
-<table class="table" style="width: auto !important; ">
+<table class="table" style="color: black; width: auto !important; ">
 <thead>
 <tr>
 <th style="text-align:left;">
@@ -108,7 +108,7 @@ <h3>Flag test descriptions</h3>
 </div>
 <div id="default-qc-test-thresholds" class="section level3">
 <h3>Default QC test thresholds</h3>
-<table class="table" style="width: auto !important; ">
+<table class="table" style="color: black; width: auto !important; ">
 <thead>
 <tr>
 <th style="text-align:left;">
@@ -321,7 +321,7 @@ <h3>Default QC test thresholds</h3>
 &gt; 18 or &lt; 1
 </td>
 <td style="text-align:left;">
-&gt;= 10 (±)
+&gt;= 4 (±)
 </td>
 <td style="text-align:left;">
 </td>
@@ -341,7 +341,93 @@ <h3>Default QC test thresholds</h3>
 &gt; 16 or &lt; 2
 </td>
 <td style="text-align:left;">
-&gt;= 5 (±)
+&gt;= 2 (±)
+</td>
+<td style="text-align:left;">
+≥6 stdev within 25 hrs
+</td>
+<td style="text-align:left;">
+&gt; 30 consecutive measurements within 0.01 units of one another
+</td>
+</tr>
+<tr>
+<td style="text-align:left;">
+Dissolved oxygen, Adjusted
+</td>
+<td style="text-align:left;">
+mg/L
+</td>
+<td style="text-align:left;">
+Fail
+</td>
+<td style="text-align:left;">
+&gt; 18 or &lt; 1
+</td>
+<td style="text-align:left;">
+&gt;= 4 (±)
+</td>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+&gt; 60 consecutive measurements within 0.01 units of one another
+</td>
+</tr>
+<tr>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+Suspect
+</td>
+<td style="text-align:left;">
+&gt; 16 or &lt; 2
+</td>
+<td style="text-align:left;">
+&gt;= 2 (±)
+</td>
+<td style="text-align:left;">
+≥6 stdev within 25 hrs
+</td>
+<td style="text-align:left;">
+&gt; 30 consecutive measurements within 0.01 units of one another
+</td>
+</tr>
+<tr>
+<td style="text-align:left;">
+Dissolved oxygen, percent saturation
+</td>
+<td style="text-align:left;">
+%
+</td>
+<td style="text-align:left;">
+Fail
+</td>
+<td style="text-align:left;">
+&gt;120 or &lt; -1
+</td>
+<td style="text-align:left;">
+&gt;= 25 (±)
+</td>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+&gt; 60 consecutive measurements within 0.01 units of one another
+</td>
+</tr>
+<tr>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+Suspect
+</td>
+<td style="text-align:left;">
+&gt;100 or &lt; 0
+</td>
+<td style="text-align:left;">
+&gt;= 10 (±)
 </td>
 <td style="text-align:left;">
 ≥6 stdev within 25 hrs
@@ -608,6 +694,49 @@ <h3>Default QC test thresholds</h3>
 &gt; 30 consecutive measurements within 0.01 units of one another
 </td>
 </tr>
+<tr>
+<td style="text-align:left;">
+Salinity
+</td>
+<td style="text-align:left;">
+ppt
+</td>
+<td style="text-align:left;">
+Fail
+</td>
+<td style="text-align:left;">
+&gt; 41 or &lt; 2
+</td>
+<td style="text-align:left;">
+&gt;= 5 (±)
+</td>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+&gt; 60 consecutive measurements within 0.01 units of one another
+</td>
+</tr>
+<tr>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+</td>
+<td style="text-align:left;">
+Suspect
+</td>
+<td style="text-align:left;">
+&gt; 37 or &lt; 3
+</td>
+<td style="text-align:left;">
+&gt;= 3 (±)
+</td>
+<td style="text-align:left;">
+≥6 stdev within 25 hrs
+</td>
+<td style="text-align:left;">
+&gt; 30 consecutive measurements within 0.01 units of one another
+</td>
+</tr>
 </tbody>
 </table>
 </div>