fix: get only fastq.gz not all gzipped #14
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main, staging] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-22.04 | |
| env: | |
| GITHUB_EVENT_NAME: ${{ github.event_name }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu-latest | |
| python: "3.11" | |
| - os: ubuntu-latest | |
| python: "3.11" | |
| pip-flags: "--pre" | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} | |
| - run: | | |
| pip install "laminci[run-notebooks]@git+https://@github.com/laminlabs/laminci" | |
| uv pip install --system "lndocs@git+https://x-access-token:${{ secrets.LAMIN_BUILD_DOCS }}@github.com/laminlabs/lndocs" | |
| sudo apt-get -y install graphviz | |
| - uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-east-1 | |
| - run: nox -s lint | |
| - run: nox -s build | |
| - uses: cloudflare/pages-action@v1 | |
| with: | |
| apiToken: ${{ secrets.CLOUDFLARE_API_TOKEN }} | |
| accountId: 472bdad691b4483dea759eadb37110bd | |
| projectName: wheretrue-lamin | |
| directory: "_build/html" | |
| gitHubToken: ${{ secrets.GITHUB_TOKEN }} | |
| branch: main | |
| wranglerVersion: "3" |