🎨 Test bionty in __repr__

Signed-off-by: zethson <[email protected]>

.github/workflows/build.yml

@@ -14,16 +14,14 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.10"]
+        python-version: ["3.11"]
     timeout-minutes: 15
 
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
           python-version: ${{ matrix.python-version }}
-          cache: "pip"
-          cache-dependency-path: ".github/workflows/build.yml" # See dependencies below
       - name: cache pre-commit
         uses: actions/cache@v3
         with:

noxfile.py

@@ -14,6 +14,6 @@ def test(session: nox.Session) -> None:
     run(session, "uv pip install --system -e .[dev]")
     run(
         session,
-        "uv pip install --system lamindb@git+https://github.com/laminlabs/lamindb",
+        "uv pip install --system lamindb@git+https://github.com/laminlabs/lamindb[bionty]",
     )
     run_pytest(session, coverage=False)

tests/test_models.py

@@ -2,6 +2,14 @@
 import textwrap
 
 import lamindb as ln
+import pytest
+
+
+@pytest.fixture(scope="module")
+def setup_instance():
+    ln.setup.init(storage="./testdb", schema="bionty")
+    yield
+    ln.setup.delete("testdb", force=True)
 
 
 def strip_ansi(text: str) -> str:
@@ -10,7 +18,7 @@ def strip_ansi(text: str) -> str:
     return ansi_escape.sub("", text)
 
 
-def test_registry__repr__param():
+def test_registry__repr__param(setup_instance):
     param = ln.Param
     expected_repr = textwrap.dedent("""\
     Param
@@ -31,7 +39,7 @@ def test_registry__repr__param():
     assert actual_repr.strip() == expected_repr.strip()
 
 
-def test_registry__repr__artifact():
+def test_registry__repr__artifact(setup_instance):
     artifact = ln.Artifact
     expected_repr = textwrap.dedent("""\
     Artifact
@@ -70,10 +78,6 @@ def test_registry__repr__artifact():
         .environment_of: Run
         .collection: Collection
         .collections: Collection
-    """).strip()
-
-    # TODO these fields should also be tested for but they require an instance with Bionty
-    """
       Bionty fields
         .organisms: bionty.Organism
         .genes: bionty.Gene
@@ -90,7 +94,7 @@ def test_registry__repr__artifact():
         .ethnicities: bionty.Ethnicity
         .reference_of_source: bionty.Source
         .reference_of_sources: bionty.Source
-    """
+    """).strip()
 
     actual_repr = strip_ansi(repr(artifact))
     assert actual_repr.strip() == expected_repr.strip()