Release 0.3.2

See https://docs.lamin.ai/changelog

What's Changed

• 📝 Add data loader examples to cellxgene guide by @Koncopd in #100
• 📝 Hide ln.Artifact output by @Koncopd in #101
• ⬆️ Drop python 3.8 support by @Koncopd in #102
• 🔥 Remove Curator.add_validated_from() by @falexwolf in #105
• ✨ More flexible Curator & 🐛 support for paths by @Zethson in #104

Full Changelog: 0.3.1...0.3.2

Release 0.3.1

See https://docs.lamin.ai/changelog

What's Changed

• ✨ Specify 5.0.0 explicitly by @Zethson in #84
• 🐛 Fix CI by @Zethson in #87
• 🐛 Fix source validation by @Zethson in #88
• Simplify code by @Zethson in #90
• 📝 Reorganize and integrate tiledbsoma guide by @Koncopd in #91
• 📝 Edit cellxgene guide by @Koncopd in #92
• 📝 Consistently use slice for arrays by @Koncopd in #93
• Fix cellxgene-schema validate numpy error by @Zethson in #95
• ✨ Add support for schema 5.1.0 by @Zethson in #97
• ✨ Use uv tool for cellxgene-schema by @Zethson in #99

Full Changelog: 0.3.0...0.3.1

Release 0.3.0

What's Changed

• ✨ Revert to passing organism explicitly by @Zethson in #75
• ✨ Manually save collection by @Zethson in #78
• 💄 Prettify cellxgene guide & refactor CI setup by @falexwolf in #82
• 🐛Fix gene curation by @Zethson in #81
• 🐛Fix uncovered line by @Zethson in #71
• 🐛 Fix ci by @sunnyosun in #73
• 🐛Fix curate throwing an exception on instantiation by @Zethson in #72
• 💚 Install bionty from github in CI by @sunnyosun in #74

Full Changelog: 0.2.6...0.3.0

Release 0.2.6

See https://docs.lamin.ai/changelog

What's Changed

• 👷 Refactor CI setup by @falexwolf in #70
• 📝 Prettify cellxgene-curate guide by @falexwolf in #68

Full Changelog: 0.2.5...0.2.6

Release 0.2.5

What's Changed

• 📝 Prettier query in cellxgene notebook by @falexwolf in #56
• ♻️ Add a query with types by @falexwolf in #57
• 💚 Remaining fix by @falexwolf in #58
• 🐛 Fix docs build by @Koncopd in #59
• 📝 Use tiledbsoma instead of census to query data by @Koncopd in #60
• ✨ Register 2024-07-01-LTS by @sunnyosun in #61
• 📝 Use backed to open census by @Koncopd in #62
• 📝 Rename backed to open in guides by @Koncopd in #63
• 🚚 Rename Annotate to Curate by @falexwolf in #64
• Update pinned lamindb to 0.74.2 by @Zethson in #65

Full Changelog: 0.2.4...0.2.5

Release 0.2.4

Full Changelog: 0.2.3...0.2.4

Release 0.2.3

What's Changed

• ✨ Fix passing organism by @Zethson in #55

Full Changelog: 0.2.2...0.2.3

Release 0.2.2

What's Changed

• 🎨 Run census & annotate in parallel by @Zethson in #45
• ⬆️ Update Annotate by @sunnyosun in #46
• ✨ Pin lamindb 0.69.5 by @Zethson in #47
• ✨ Compare installed and expected cellxgene-schema versions by @Zethson in #49
• ✨ Pinned ontologies schema by @Zethson in #50
• ♻️ Simplify guide by @falexwolf in #51
• 💚 Fix data arg by @sunnyosun in #52
• 👷 Use uv by @sunnyosun in #53
• ♻️ Fixes for lamindb 0.72 by @falexwolf in #54

Full Changelog: 0.2.0...0.2.2

Release 0.2.0

What's Changed

• Add 5.1.0 pinned ontologies & ruff by @Zethson in #37
• Fix notebook execution rendering by @Zethson in #39
• Fix census notebook execution not being shown by @Zethson in #41
• 🚚 Rename Validate to Annotate by @sunnyosun in #43
• ⬆️ Pin lamindb to 0.69.3 by @Zethson in #42

New Contributors

• @Zethson made their first contribution in #37

Full Changelog: 0.1.0...0.2.0

Release 0.1.0

What's Changed

• 👷 Set up CI by @sunnyosun in #1
• ✨ Query census with auto-complete by @sunnyosun in #2
• ✨ Registered datasets by @sunnyosun in #3
• 📝 Add search and ontology hierarchies by @sunnyosun in #4
• 🍱 Add sqlite instance by @sunnyosun in #5
• 📝 Updated guides by @sunnyosun in #6
• 🎨 Use abbr for names that are not matching by @sunnyosun in #7
• 📝 Updated guide to not register Dataset by @sunnyosun in #8
• 📝 Update linking file to feature sets by @sunnyosun in #9
• 📝 Add a notebook for querying lamin instance by @sunnyosun in #10
• ♻️ Run the 3rd nb directly from public instance by @sunnyosun in #11
• 🎨 Track the version of the overall dataset by @sunnyosun in #12
• 💄 Polish the guides by @falexwolf in #13
• 🎨 Using local instance to store queried data by @sunnyosun in #14
• 📝 Prettify by @falexwolf in #15
• 📝 Add queries for array slices by @falexwolf in #16
• 📝 Load the backed slice into memory & prettify by @Koncopd in #17
• 📝 Section on concat by @falexwolf in #18
• 📝 Remove modality by @sunnyosun in #19
• 📝 Fix outputs of curation notebooks by @sunnyosun in #20
• 🍱 Register files from the 2023-11 release by @sunnyosun in #21
• 🚚 Rename to cellxgene by @sunnyosun in #22
• ♻️ Register cellxgene metadata via REST API by @sunnyosun in #23
• 🔥 Remove registries from the main docs by @sunnyosun in #24
• 🚚 Rename file to artifact by @falexwolf in #26
• ✨ Register 2023-12-06 by @sunnyosun in #25
• 🚚 Rename Dataset to Collection by @falexwolf in #27
• 🎨 Filter for collections by @sunnyosun in #28
• 🐛 Fix from_public by @sunnyosun in #29
• ✨ Register 2023-12-15 LTS by @sunnyosun in #30
• 🎨 Properly register versions of artifacts and collections by @sunnyosun in #31
• 🎨 Import bionty instead of lb by @sunnyosun in #32
• 👷 Use 3.10 for tests by @sunnyosun in #33
• 💚 Fix CI by @sunnyosun in #34
• ✨ Moved cellxgene-lamin-validator here by @sunnyosun in #36

New Contributors

• @sunnyosun made their first contribution in #1
• @falexwolf made their first contribution in #13
• @Koncopd made their first contribution in #17

Full Changelog: https://github.com/laminlabs/cellxgene-lamin/commits/0.1.0