v0.0.2

StrobeAlign is now parallelized with OpenMP and can read fastq and gzipped fastq files with kseqpp.

TODO

• PE-alignment mode and joint scoring
• Separate creation and storage of reference index

v0.0.1

The first stable working version of of StrobeAlign used for the experiments in the first version of the preprint.

TODO:

• Read fastq
• Parallelize mapping
• PE-alignment mode and joint scoring
• Separate creation and storage of reference index