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ksahlin committed Jun 22, 2021
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StrobeAlign
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Short-read aligner using syncmer-thinned strobemers. This implementation is currently proof-of-concept. The default parameter setting is tailored for Illumina reads of length 150-500. For longer reads, we need chaining of seeds instead of the current merging of overlapping seeds as described in the [preprint]().
Short-read aligner using syncmer-thinned strobemers. The implementation is currently proof-of-concept. The default parameter setting is tailored for Illumina reads of length 150-500. For longer reads, we need chaining of seeds instead of the current approach, which is merging of overlapping seeds as described in the [preprint](https://doi.org/10.1101/2021.06.18.449070).


INSTALLATION
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CREDITS
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1. Kristoffer Sahlin. Faster short-read mapping with strobemer seeds in syncmer space. bioRxiv,
2021. doi:10.1101/2021.06.18.449070. Preprint available [here](https://doi.org/10.1101/2021.06.18.449070).
Kristoffer Sahlin. Faster short-read mapping with strobemer seeds in syncmer space. bioRxiv, 2021. doi:10.1101/2021.06.18.449070. Preprint available [here](https://doi.org/10.1101/2021.06.18.449070).


LICENCE
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