Changelog
- #388 and #426: Increase accuracy and mapping rate for reads shorter than
about 200 bp by introducing multi-context seeds.
Previously, seeds always consisted of two k-mers and would only be found if
both occur in query and reference.
With this change, strobealign falls back to looking up just one of the k-mers
when appropriate.
This feature is currently experimental and only enabled when using the
--mcscommand-line option.
Contributed by Ivan Tolstoganov (@Itolstoganov). - #421: Allow references with up to 2^32 contigs (instead of 2^23
previously) by changing the way randstrobes are stored in the index. - #467: Reading a reference with many small references was sped up.
Contributed by @luispedro.
Contributors
luispedro and Itolstoganov