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Updated parameters according to optimization in issue #423
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ksahlin authored and marcelm committed May 22, 2024
1 parent 6d3859f commit ef13d8b
Showing 1 changed file with 7 additions and 7 deletions.
14 changes: 7 additions & 7 deletions src/indexparameters.cpp
Original file line number Diff line number Diff line change
Expand Up @@ -36,14 +36,14 @@ struct Profile {
static auto max{std::numeric_limits<int>::max()};

static std::vector<Profile> profiles = {
Profile{ 50, 70, 17, -4, -2, 0},
Profile{ 75, 90, 20, -4, -3, -1},
Profile{100, 110, 18, -4, 1, 3},
Profile{ 50, 70, 16, -4, -2, -1},
Profile{ 75, 90, 19, -4, -1, -1},
Profile{100, 110, 17, -4, 1, 4},
Profile{125, 135, 20, -4, 1, 4},
Profile{150, 175, 22, -4, 3, 5},
Profile{250, 275, 24, -4, 4, 12},
Profile{300, 375, 24, -4, 5, 13},
Profile{400, max, 25, -6, 7, 13},
Profile{150, 175, 20, -4, 2, 6},
Profile{250, 275, 23, -4, 3, 13},
Profile{300, 375, 25, -4, 3, 14},
Profile{400, max, 27, -6, 5, 14},
};

/* Create an IndexParameters instance based on a given read length.
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