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Cluster gs streams #2159

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1ecbc6c
Stream support for Gauss-Seidel: Symbolic, Numeric, Apply (Twostage)
e10harvey Sep 26, 2023
7408367
sparse/unit_test: Test twostage with streams
e10harvey Sep 26, 2023
f4e3df5
Update omega_tsgs_classic type
e10harvey Sep 26, 2023
6f510b3
Move sptrsv to streams
e10harvey Sep 27, 2023
7505956
Add lightweighthint
e10harvey Sep 27, 2023
35b8474
update symbolic check_count
e10harvey Oct 31, 2023
47ecfe9
Stream support for Gauss-Seidel: Symbolic, Numeric, Apply (Twostage)
e10harvey Sep 26, 2023
62c3ffb
WIP, need twostage changes before proceeding
e10harvey Oct 3, 2023
33e8a05
Stream support for Gauss-Seidel: Symbolic, Numeric, Apply (Cluster)
e10harvey Oct 9, 2023
ba9bef8
sparse/unit_test: Reduce runtime and add diag output
e10harvey Oct 10, 2023
c970ba8
Fix constructors
e10harvey Oct 26, 2023
76d37eb
Fix sphinx build
e10harvey Oct 31, 2023
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4 changes: 3 additions & 1 deletion docs/developer/apidocs/sparse.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -60,9 +60,11 @@ block_spgemm

gauss_seidel
------------
.. doxygenfunction:: create_gs_handle(KokkosSparse::GSAlgorithm gs_algorithm, KokkosGraph::ColoringAlgorithm coloring_algorithm)
.. doxygenfunction:: create_gs_handle(const HandleExecSpace&, int, KokkosSparse::GSAlgorithm gs_algorithm, KokkosGraph::ColoringAlgorithm coloring_algorithm)
.. doxygenfunction:: create_gs_handle(KokkosSparse::GSAlgorithm gs_algorithm, KokkosGraph::ColoringAlgorithm coloring_algorithm)
.. doxygenfunction:: create_gs_handle(const HandleExecSpace&, int, KokkosSparse::ClusteringAlgorithm, nnz_lno_t, KokkosGraph::ColoringAlgorithm)
.. doxygenfunction:: create_gs_handle(KokkosSparse::ClusteringAlgorithm, nnz_lno_t, KokkosGraph::ColoringAlgorithm)
.. doxygenfunction:: destroy_gs_handle()
.. doxygenfunction:: gauss_seidel_symbolic(const ExecutionSpace &space, KernelHandle *handle, typename KernelHandle::const_nnz_lno_t num_rows, typename KernelHandle::const_nnz_lno_t num_cols, lno_row_view_t_ row_map, lno_nnz_view_t_ entries, bool is_graph_symmetric)
.. doxygenfunction:: gauss_seidel_symbolic(KernelHandle *handle, typename KernelHandle::const_nnz_lno_t num_rows, typename KernelHandle::const_nnz_lno_t num_cols, lno_row_view_t_ row_map, lno_nnz_view_t_ entries, bool is_graph_symmetric)
.. doxygenfunction:: gauss_seidel_numeric(const ExecutionSpace &space, KernelHandle *handle, typename KernelHandle::const_nnz_lno_t num_rows, typename KernelHandle::const_nnz_lno_t num_cols, lno_row_view_t_ row_map, lno_nnz_view_t_ entries, scalar_nnz_view_t_ values, bool is_graph_symmetric)
Expand Down
107 changes: 68 additions & 39 deletions sparse/impl/KokkosSparse_cluster_gauss_seidel_impl.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -89,7 +89,7 @@ class ClusterGaussSeidel {
typedef typename HandleType::scalar_persistent_work_view_t
scalar_persistent_work_view_t;

typedef Kokkos::RangePolicy<MyExecSpace> my_exec_space;
typedef Kokkos::RangePolicy<MyExecSpace> range_policy_t;
typedef nnz_lno_t color_t;
typedef Kokkos::View<color_t*, MyTempMemorySpace> color_view_t;
typedef Kokkos::Bitset<MyExecSpace> bitset_t;
Expand Down Expand Up @@ -519,6 +519,7 @@ class ClusterGaussSeidel {
using raw_colinds_t = Kokkos::View<const nnz_lno_t*, MyTempMemorySpace,
Kokkos::MemoryTraits<Kokkos::Unmanaged>>;
auto gsHandle = get_gs_handle();
auto my_exec_space = gsHandle->get_execution_space();
#ifdef KOKKOSSPARSE_IMPL_TIME_REVERSE
Kokkos::Timer timer;
#endif
Expand All @@ -528,6 +529,8 @@ class ClusterGaussSeidel {
// symmetric and non-symmetric input cases.
rowmap_t sym_xadj;
colinds_t sym_adj;
// TODO: pass my_exec_space into KokkosGraph kernels. Requires
// https://github.com/kokkos/kokkos-kernels/issues/1879.
if (!this->is_symmetric) {
KokkosKernels::Impl::symmetrize_graph_symbolic_hashmap<
in_rowmap_t, in_colinds_t, rowmap_t, colinds_t, MyExecSpace>(
Expand Down Expand Up @@ -649,10 +652,14 @@ class ClusterGaussSeidel {
#endif
nnz_lno_persistent_work_view_t color_xadj;
nnz_lno_persistent_work_view_t color_adj;

// Wait for coloring to finish on its stream
using ColoringExecSpace = typename HandleType::HandleExecSpace;
ColoringExecSpace().fence();
KokkosKernels::Impl::create_reverse_map<
typename HandleType::GraphColoringHandleType::color_view_t,
nnz_lno_persistent_work_view_t, MyExecSpace>(
numClusters, numColors, colors, color_xadj, color_adj);
my_exec_space, numClusters, numColors, colors, color_xadj, color_adj);
#ifdef KOKKOSSPARSE_IMPL_TIME_REVERSE
MyExecSpace().fence();
std::cout << "CREATE_REVERSE_MAP:" << timer.seconds() << std::endl;
Expand All @@ -661,6 +668,8 @@ class ClusterGaussSeidel {
nnz_lno_persistent_work_host_view_t color_xadj_host(
Kokkos::view_alloc(Kokkos::WithoutInitializing, "Color xadj"),
color_xadj.extent(0));
// NOTE: the below deep copy ensures that we don't start running numeric
// on a non-default stream until our symbolic data has landed.
Kokkos::deep_copy(color_xadj_host, color_xadj);
gsHandle->set_color_xadj(color_xadj_host);
gsHandle->set_color_adj(color_adj);
Expand Down Expand Up @@ -735,7 +744,8 @@ class ClusterGaussSeidel {
};

void initialize_numeric() {
auto gsHandle = get_gs_handle();
auto gsHandle = get_gs_handle();
auto my_exec_space = gsHandle->get_execution_space();
if (!gsHandle->is_symbolic_called()) {
this->initialize_symbolic();
}
Expand All @@ -751,25 +761,29 @@ class ClusterGaussSeidel {
this->handle->get_suggested_team_size(suggested_vector_size);

scalar_persistent_work_view_t inverse_diagonal(
Kokkos::view_alloc(Kokkos::WithoutInitializing, "Aii^-1"), num_rows);
Kokkos::view_alloc(my_exec_space, Kokkos::WithoutInitializing,
"Aii^-1"),
num_rows);
nnz_lno_t rows_per_team = this->handle->get_team_work_size(
suggested_team_size, MyExecSpace().concurrency(), num_rows);
suggested_team_size, my_exec_space.concurrency(), num_rows);

if (have_diagonal_given) {
Kokkos::deep_copy(inverse_diagonal, this->given_inverse_diagonal);
Kokkos::deep_copy(my_exec_space, inverse_diagonal,
this->given_inverse_diagonal);
} else {
// extract inverse diagonal from matrix
Get_Matrix_Diagonals gmd(this->row_map, this->entries, this->values,
inverse_diagonal, num_rows, rows_per_team);
if (gsHandle->use_teams()) {
Kokkos::parallel_for(
"KokkosSparse::GaussSeidel::team_get_matrix_diagonals",
team_policy_t((num_rows + rows_per_team - 1) / rows_per_team,
team_policy_t(my_exec_space,
(num_rows + rows_per_team - 1) / rows_per_team,
suggested_team_size, suggested_vector_size),
gmd);
} else {
Kokkos::parallel_for("KokkosSparse::GaussSeidel::get_matrix_diagonals",
my_exec_space(0, num_rows), gmd);
range_policy_t(my_exec_space, 0, num_rows), gmd);
}
}
gsHandle->set_inverse_diagonal(inverse_diagonal);
Expand All @@ -787,7 +801,8 @@ class ClusterGaussSeidel {
nnz_scalar_t omega = Kokkos::ArithTraits<nnz_scalar_t>::one(),
bool apply_forward = true, bool apply_backward = true,
bool /*update_y_vector*/ = true) {
auto gsHandle = get_gs_handle();
auto gsHandle = get_gs_handle();
auto my_exec_space = gsHandle->get_execution_space();

size_type nnz = entries.extent(0);
nnz_lno_persistent_work_view_t color_adj = gsHandle->get_color_adj();
Expand All @@ -797,8 +812,8 @@ class ClusterGaussSeidel {
color_t numColors = gsHandle->get_num_colors();

if (init_zero_x_vector) {
KokkosKernels::Impl::zero_vector<x_value_array_type, MyExecSpace>(
num_cols, x_lhs_output_vec);
KokkosKernels::Impl::zero_vector(my_exec_space, num_cols,
x_lhs_output_vec);
}

scalar_persistent_work_view_t inverse_diagonal =
Expand All @@ -811,7 +826,7 @@ class ClusterGaussSeidel {
this->handle->get_suggested_team_size(suggested_vector_size);

nnz_lno_t rows_per_team = this->handle->get_team_work_size(
suggested_team_size, MyExecSpace().concurrency(), num_rows);
suggested_team_size, my_exec_space.concurrency(), num_rows);
// Get clusters per team. Round down to favor finer granularity, since
// this is sensitive to load imbalance
nnz_lno_t clusters_per_team =
Expand All @@ -825,33 +840,34 @@ class ClusterGaussSeidel {
color_adj, gsHandle->get_cluster_xadj(), gsHandle->get_cluster_adj(),
inverse_diagonal, clusters_per_team, omega);

this->IterativeTeamPSGS(gs, numColors, h_color_xadj, suggested_team_size,
suggested_vector_size, numIter, apply_forward,
apply_backward);
this->IterativeTeamPSGS(my_exec_space, gs, numColors, h_color_xadj,
suggested_team_size, suggested_vector_size,
numIter, apply_forward, apply_backward);
} else {
PSGS<x_value_array_type, y_value_array_type> gs(
this->row_map, this->entries, this->values, x_lhs_output_vec,
y_rhs_input_vec, color_adj, gsHandle->get_cluster_xadj(),
gsHandle->get_cluster_adj(), omega, inverse_diagonal);

this->IterativePSGS(gs, numColors, h_color_xadj, numIter, apply_forward,
apply_backward);
this->IterativePSGS(my_exec_space, gs, numColors, h_color_xadj, numIter,
apply_forward, apply_backward);
}
}

template <typename TPSGS>
void IterativeTeamPSGS(TPSGS& gs, color_t numColors,
void IterativeTeamPSGS(MyExecSpace& my_exec_space, TPSGS& gs,
color_t numColors,
nnz_lno_persistent_work_host_view_t h_color_xadj,
nnz_lno_t team_size, nnz_lno_t vec_size,
int num_iteration, bool apply_forward,
bool apply_backward) {
for (int i = 0; i < num_iteration; ++i)
this->DoTeamPSGS(gs, numColors, h_color_xadj, team_size, vec_size,
apply_forward, apply_backward);
this->DoTeamPSGS(my_exec_space, gs, numColors, h_color_xadj, team_size,
vec_size, apply_forward, apply_backward);
}

template <typename TPSGS>
void DoTeamPSGS(TPSGS& gs, color_t numColors,
void DoTeamPSGS(MyExecSpace& my_exec_space, TPSGS& gs, color_t numColors,
nnz_lno_persistent_work_host_view_t h_color_xadj,
nnz_lno_t team_size, nnz_lno_t vec_size, bool apply_forward,
bool apply_backward) {
Expand All @@ -865,9 +881,12 @@ class ClusterGaussSeidel {
gs._color_set_end = color_index_end;
Kokkos::parallel_for(
"KokkosSparse::GaussSeidel::Team_PSGS::forward",
team_policy_t((overall_work + gs._clusters_per_team - 1) /
gs._clusters_per_team,
team_size, vec_size),
Kokkos::Experimental::require(
team_policy_t(my_exec_space,
(overall_work + gs._clusters_per_team - 1) /
gs._clusters_per_team,
team_size, vec_size),
Kokkos::Experimental::WorkItemProperty::HintLightWeight),
gs);
}
}
Expand All @@ -882,10 +901,13 @@ class ClusterGaussSeidel {
gs._color_set_begin = color_index_begin;
gs._color_set_end = color_index_end;
Kokkos::parallel_for(
"KokkosSparse::GaussSeidel::Team_PSGS::forward",
team_policy_t((overall_work + gs._clusters_per_team - 1) /
gs._clusters_per_team,
team_size, vec_size),
"KokkosSparse::GaussSeidel::Team_PSGS::backward",
Kokkos::Experimental::require(
team_policy_t(my_exec_space,
(overall_work + gs._clusters_per_team - 1) /
gs._clusters_per_team,
team_size, vec_size),
Kokkos::Experimental::WorkItemProperty::HintLightWeight),
gs);
if (i == 0) {
break;
Expand All @@ -895,17 +917,18 @@ class ClusterGaussSeidel {
}

template <typename PSGS>
void IterativePSGS(PSGS& gs, color_t numColors,
void IterativePSGS(MyExecSpace& my_exec_space, PSGS& gs, color_t numColors,
nnz_lno_persistent_work_host_view_t h_color_xadj,
int num_iteration, bool apply_forward,
bool apply_backward) {
for (int i = 0; i < num_iteration; ++i) {
this->DoPSGS(gs, numColors, h_color_xadj, apply_forward, apply_backward);
this->DoPSGS(my_exec_space, gs, numColors, h_color_xadj, apply_forward,
apply_backward);
}
}

template <typename PSGS>
void DoPSGS(PSGS& gs, color_t numColors,
void DoPSGS(MyExecSpace& my_exec_space, PSGS& gs, color_t numColors,
nnz_lno_persistent_work_host_view_t h_color_xadj,
bool apply_forward, bool apply_backward) {
if (apply_forward) {
Expand All @@ -914,10 +937,13 @@ class ClusterGaussSeidel {
nnz_lno_t color_index_end = h_color_xadj(i + 1);
gs._color_set_begin = color_index_begin;
gs._color_set_end = color_index_end;
Kokkos::parallel_for("KokkosSparse::GaussSeidel::PSGS::forward",
Kokkos::RangePolicy<MyExecSpace, PSGS_ForwardTag>(
0, color_index_end - color_index_begin),
gs);
Kokkos::parallel_for(
"KokkosSparse::GaussSeidel::PSGS::forward",
Kokkos::Experimental::require(
Kokkos::RangePolicy<MyExecSpace, PSGS_ForwardTag>(
my_exec_space, 0, color_index_end - color_index_begin),
Kokkos::Experimental::WorkItemProperty::HintLightWeight),
gs);
}
}
if (apply_backward && numColors) {
Expand All @@ -926,10 +952,13 @@ class ClusterGaussSeidel {
nnz_lno_t color_index_end = h_color_xadj(i + 1);
gs._color_set_begin = color_index_begin;
gs._color_set_end = color_index_end;
Kokkos::parallel_for("KokkosSparse::GaussSeidel::PSGS::backward",
Kokkos::RangePolicy<MyExecSpace, PSGS_BackwardTag>(
0, color_index_end - color_index_begin),
gs);
Kokkos::parallel_for(
"KokkosSparse::GaussSeidel::PSGS::backward",
Kokkos::Experimental::require(
Kokkos::RangePolicy<MyExecSpace, PSGS_BackwardTag>(
my_exec_space, 0, color_index_end - color_index_begin),
Kokkos::Experimental::WorkItemProperty::HintLightWeight),
gs);
if (i == 0) {
break;
}
Expand Down
9 changes: 4 additions & 5 deletions sparse/impl/KokkosSparse_sptrsv_symbolic_impl.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -274,7 +274,7 @@ void lower_tri_symbolic(ExecSpaceIn& space, TriSolveHandle& thandle,
Kokkos::parallel_reduce(
"check_count host",
Kokkos::RangePolicy<Kokkos::DefaultHostExecutionSpace>(
0, nodes_per_level.extent(0)),
space, 0, nodes_per_level.extent(0)),
KOKKOS_LAMBDA(const long i, long& update) {
update += nodes_per_level(i);
},
Expand All @@ -285,8 +285,7 @@ void lower_tri_symbolic(ExecSpaceIn& space, TriSolveHandle& thandle,
check_count = 0; // reset
Kokkos::parallel_reduce(
"check_count device",
Kokkos::RangePolicy<Kokkos::DefaultExecutionSpace>(
0, dnodes_per_level.extent(0)),
Kokkos::RangePolicy<ExecutionSpace>(0, dnodes_per_level.extent(0)),
KOKKOS_LAMBDA(const long i, long& update) {
update += dnodes_per_level(i);
},
Expand Down Expand Up @@ -740,8 +739,8 @@ void upper_tri_symbolic(ExecutionSpace& space, TriSolveHandle& thandle,
check_count = 0; // reset
Kokkos::parallel_reduce(
"check_count device",
Kokkos::RangePolicy<Kokkos::DefaultExecutionSpace>(
0, dnodes_per_level.extent(0)),
Kokkos::RangePolicy<ExecutionSpace>(space, 0,
dnodes_per_level.extent(0)),
KOKKOS_LAMBDA(const long i, long& update) {
update += dnodes_per_level(i);
},
Expand Down
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