T1k HLA Genotyping and STAR Diploid Beta

dmiller15 released this 23 Jul 19:46

· 18 commits to master since this release

23f866f

T1k HLA Genotyping

This release adds HLA Genotyping to the RNAseq workflow. The process is done using the T1k software. For more information, see our readme: https://github.com/kids-first/kf-rnaseq-workflow/blob/master/docs/T1K_README.md

STAR Diploid Beta

This release also adds a new beta workflow for STAR Diploid. It uses a patient's DNA variant calls to create a "personal genome" (PG) for improved alignment. For more information, see our readme: https://github.com/kids-first/kf-rnaseq-workflow/blob/master/docs/STAR_2.7.11b_DIPLOID.md

Other Changes

Updated RNASeQC tool

What's Changed

🚀 STAR Diploid BETA WF by @migbro in #52
🎉 add T1k HLA typer by @dmiller15 in #54
🛠️ RNASeQC Updates by @migbro in #56
🔖 bump release to 4.8.0 by @dmiller15 in #57

Full Changelog: v4.7.0...v4.8.0

Contributors

migbro and dmiller15

Assets 2