🐛 Remove tumor location facet (clinical) + Fix typo + and tsv export …

…for method_of_sample_procurement (#3856)
kids-first · Nov 17, 2023 · 5a023ab · 5a023ab
1 parent e08e738
commit 5a023ab
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Showing 4 changed files with 4 additions and 5 deletions.
diff --git a/src/locales/en.ts b/src/locales/en.ts
@@ -1194,7 +1194,7 @@ const en = {
     bio_repository: 'Biorepository',
     collection_ncit_anatomy_site_id: 'Anatomical Site (NCIT)',
     collection_anatomy_site: 'Anatomical Site (Source Text)',
-    collection_method_of_sample_procurement: 'Method Of Sample Procurement',
+    collection_method_of_sample_procurement: 'Method of Sample Procurement',
     dbgap_consent_code: 'dbGaP Consent Code',
     diagnosis_mondo: 'Histological Diagnosis (MONDO)',
     diagnosis_ncit: 'Histological Diagnosis (NCIT)',
@@ -1482,7 +1482,7 @@ const en = {
       tissue_type: 'Tissue Type (Source Text)',
       volume: 'Volume',
       volume_unit: 'Volume Unit',
-      collection_method_of_sample_procurement: 'Method Of Sample Procurement',
+      collection_method_of_sample_procurement: 'Method of Sample Procurement',
       tissue_type_source_text: 'Tissue Type (Source Text)',
       ncit_id_tissue_type: 'Tissue Type (NCIT)',
       source_text_tumor_descriptor: 'Tumor Descriptor (Source Text)',

diff --git a/src/utils/translation.ts b/src/utils/translation.ts
@@ -306,7 +306,7 @@ export const getFacetsDictionary = () => ({
   status: 'Sample Availability',
   collection_ncit_anatomy_site_id: 'Anatomical Site (NCIT)',
   collection_anatomy_site: 'Anatomical Site (Source Text)',
-  collection_method_of_sample_procurement: 'Method Of Sample Procurement',
+  collection_method_of_sample_procurement: 'Method of Sample Procurement',
   dbgap_consent_code: 'dbGaP Consent Code',
   diagnosis_mondo: 'Histological Diagnosis (MONDO)',
   diagnosis_ncit: 'Histological Diagnosis (NCIT)',

diff --git a/src/views/DataExploration/components/PageContent/tabs/Biospecimens/index.tsx b/src/views/DataExploration/components/PageContent/tabs/Biospecimens/index.tsx
@@ -250,7 +250,7 @@ const getDefaultColumns = (): ProColumnType<any>[] => [
     render: (consent_type) => consent_type || TABLE_EMPTY_PLACE_HOLDER,
   },
   {
-    key: 'method_of_sample_procurement',
+    key: 'collection_method_of_sample_procurement',
     title: intl.get('entities.biospecimen.collection_method_of_sample_procurement'),
     dataIndex: 'collection_method_of_sample_procurement',
     defaultHidden: true,

diff --git a/src/views/DataExploration/index.tsx b/src/views/DataExploration/index.tsx
@@ -102,7 +102,6 @@ const filterGroups: {
           />,
           'phenotype__hpo_phenotype_not_observed',
           'phenotype__source_text',
-          'diagnosis__source_text_tumor_location',
           'outcomes__vital_status',
         ],
       },