fix: SJIP-1091 convert gene list to upper case

kids-first · Nov 14, 2024 · 75eb6f0 · 75eb6f0
1 parent 48c4330
commit 75eb6f0
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/src/endpoints/transcriptomics/service.ts b/src/endpoints/transcriptomics/service.ts
@@ -228,6 +228,7 @@ export const checkSampleIdsAndGene = async (sample_ids: string[], ensembl_gene_i
 
 export const checkGenesExist = async (genes: string[]): Promise<MatchedGene[]> => {
     const client = EsInstance.getInstance();
+    const genesUpperCase = genes.map(gene => gene.toUpperCase());
 
     const { body } = await client.search({
         index: esDiffGeneExpIndex,
@@ -237,12 +238,12 @@ export const checkGenesExist = async (genes: string[]): Promise<MatchedGene[]> =
                     should: [
                         {
                             terms: {
-                                gene_symbol: genes,
+                                gene_symbol: genesUpperCase,
                             },
                         },
                         {
                             terms: {
-                                ensembl_gene_id: genes,
+                                ensembl_gene_id: genesUpperCase,
                             },
                         },
                     ],