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22 followers · 13 following
  • KEMRI-Wellcome Trust Research Programme
  • Kilifi, Kenya
  • 10:27 (UTC +03:00)
  • X @kevinkariuki

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Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

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Achievement: Pull Sharkx2Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor

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  1. snakemake-illumina-gatkvariant snakemake-illumina-gatkvariant Public

    A Snakemake workflow for variant calling using GATK4 best practices

    Python 5 2

  2. snakemake-illumina-fastqc snakemake-illumina-fastqc Public

    A Snakemake workflow for quality control assessment of Illumina NGS data using FastQC and MultiQC

    Python 1 1

  3. plasmo-seq-grabber plasmo-seq-grabber Public

    A bash script for downloading sequence datasets from PlasmoDb, a Plasmodium informatics resource

    Shell

  4. snakemake-illumina-bcftoolsvariant snakemake-illumina-bcftoolsvariant Public

    Python

  5. seekdeep-workflows seekdeep-workflows Public

    This repository contains a suite of bash pipelines designed for the analysis of amplicon sequencing data using SeekDeep

    Shell 1

  6. wgs-amplicon-analysis wgs-amplicon-analysis Public

    These R scripts are tailored to process and visualize outputs from various tools like bcftools, SeekDeep, e.t.c, ensuring comprehensive and user-friendly downstream analysis.

    R 1