This module contains only one method called "Build Pangenome with OrthoMCL". It is using "OrthoMCL"[1] software to calculate orthologous protein clusters and store them as KBase Pangenome object.
See also http://orthomcl.org/
[1] Fischer, S., Brunk, B. P., Chen, F., Gao, X., Harb, O. S., Iodice, J. B., Shanmugam, D., Roos, D. S. and Stoeckert, C. J.
Using OrthoMCL to Assign Proteins to OrthoMCL-DB Groups or to Cluster Proteomes Into New Ortholog Groups
Current Protocols in Bioinformatics. 2011 35:6.12.1–6.12.19.