RE2022-272: Add a bulk version of genbank_to_genome in GFU #253
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| name: KBase SDK Tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| sdk_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out GitHub repo | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| uses: actions/checkout@v2 | |
| - name: Check out Actions CI files | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: 'kbaseapps/kb_sdk_actions' | |
| path: 'kb_sdk_actions' | |
| - name: Set up test environment | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_CI_TOKEN }} | |
| run: | | |
| # Verify kb_sdk_actions clone worked | |
| test -f "$HOME/kb_sdk_actions/bin/kb-sdk" && echo "CI files cloned" | |
| # Pull kb-sdk & create startup script | |
| docker pull kbase/kb-sdk | |
| sh $GITHUB_WORKSPACE/kb_sdk_actions/bin/make_testdir && echo "Created test_local" | |
| test -f "test_local/test.cfg" && echo "Confirmed config exists" | |
| - name: Configure authentication | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_CI_TOKEN }} | |
| KBASE_TEST_TOKEN2: ${{ secrets.KBASE_CI_TOKEN2 }} | |
| run: | | |
| # Add token to config | |
| sed -ie "s/^test_token=.*$/&$KBASE_TEST_TOKEN/g" ./test_local/test.cfg | |
| # Change deployment env from appdev to ci | |
| sed -ie "s+https://appdev.kbase.us+https://ci.kbase.us+g" ./test_local/test.cfg | |
| # Add second user credentials | |
| echo "test_token2=$KBASE_TEST_TOKEN2" >> ./test_local/test.cfg | |
| - name: Run tests | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| run: | | |
| sh $GITHUB_WORKSPACE/kb_sdk_actions/bin/kb-sdk test | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true |