batch saving genomes #290
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: KBase SDK Tests | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| sdk_tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out GitHub repo | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| uses: actions/checkout@v2 | |
| - name: Set up test environment | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_CI_TOKEN }} | |
| run: | | |
| sh scripts/GHA/make_testdir && echo "Created test_local" | |
| test -f "test_local/test.cfg" && echo "Confirmed config exists" | |
| - name: Configure authentication | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_CI_TOKEN }} | |
| KBASE_TEST_TOKEN2: ${{ secrets.KBASE_CI_TOKEN2 }} | |
| run: | | |
| # Add token to config | |
| sed -ie "s/^test_token=.*$/&$KBASE_TEST_TOKEN/g" ./test_local/test.cfg | |
| # Change deployment env from appdev to ci | |
| sed -ie "s+https://appdev.kbase.us+https://ci.kbase.us+g" ./test_local/test.cfg | |
| # Add second user credentials | |
| echo "test_token2=$KBASE_TEST_TOKEN2" >> ./test_local/test.cfg | |
| - name: Run tests | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| shell: bash | |
| run: | | |
| sh scripts/GHA/kb-sdk test --verbose | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true |