363 python Server.py file adds extraneous quotes to error messages #11
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| name: Basic kb-sdk functionality tests | |
| on: | |
| pull_request: | |
| branches: | |
| - develop | |
| - main | |
| - master | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - closed | |
| jobs: | |
| test_kb-sdk_builds: | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-latest] | |
| language: [perl, python, java] | |
| test_type: [base] #, example] | |
| auth: [token, env_var] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| # build kb-sdk from source and test basic functions | |
| - name: Set up JDK 1.8 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: temurin | |
| java-version: 8.0.362+9 | |
| - name: Build with Ant | |
| run: | | |
| make | |
| - name: Add bin to $PATH | |
| run: | | |
| echo "$GITHUB_WORKSPACE/bin" >> $GITHUB_PATH | |
| - name: checking kb-sdk functions | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| LANGUAGE_TOKEN: ${{ matrix.language }} | |
| run: | | |
| env | |
| kb-sdk help | |
| kb-sdk version | |
| # the following steps create a KBase app using the SDK | |
| # and runs some checks to ensure the app generated | |
| # is functional and that the SDK can test it. | |
| - name: init base repo | |
| if: matrix.test_type == 'base' | |
| env: | |
| LANGUAGE_TOKEN: ${{ matrix.language }} | |
| run: | | |
| kb-sdk init -l $LANGUAGE_TOKEN -u user SampleApp | |
| - name: init example repo | |
| if: matrix.test_type == 'example' | |
| env: | |
| LANGUAGE_TOKEN: ${{ matrix.language }} | |
| run: | | |
| kb-sdk init -l $LANGUAGE_TOKEN -u user --example SampleApp | |
| - name: test ${{ matrix.test_type }} repo, using test.cfg for auth | |
| if: matrix.auth == 'token' | |
| run: | | |
| cd SampleApp | |
| kb-sdk test || true | |
| - name: test ${{ matrix.test_type }} repo, using test.cfg for auth, add env var to test.cfg | |
| if: matrix.auth == 'token' | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| cd SampleApp | |
| sed -i "s/test_token=/test_token=$KBASE_TEST_TOKEN/" test_local/test.cfg | |
| kb-sdk test | |
| - name: test ${{ matrix.test_type }} repo, using env var for auth | |
| if: matrix.auth == 'env_var' | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| cd SampleApp | |
| kb-sdk test | |
| - name: make resulting app available as artefact in case of failure | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: kbaseapp-${{ matrix.language }}-${{ matrix.test_type }}-${{ matrix.os }} | |
| path: SampleApp | |
| test_existing_repos: | |
| if: "!contains(github.event.head_commit.message, 'skip ci')" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-20.04, ubuntu-latest] | |
| # TODO: add a Java app. WsLargeDataIO does not currently build as it relies on a Java | |
| # repo that no longer exists. | |
| app: [KBaseReport] # , WsLargeDataIO] | |
| auth: [token, env_var] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up JDK 1.8 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: temurin | |
| java-version: 8.0.362+9 | |
| - name: Build with Ant | |
| run: | | |
| make | |
| - name: Add bin to $PATH | |
| run: | | |
| echo "$GITHUB_WORKSPACE/bin" >> $GITHUB_PATH | |
| - name: checking basic kb-sdk functions | |
| run: | | |
| env | |
| kb-sdk help | |
| kb-sdk version | |
| # the following steps check out and run the tests of an existing KBase app | |
| - name: Checkout existing kbase module ${{ matrix.app }} | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: kbaseapps/${{ matrix.app }} | |
| path: kbase_app | |
| - name: run repo tests, using test.cfg for auth | |
| if: matrix.auth == 'token' | |
| run: | | |
| cd kbase_app | |
| kb-sdk test || true | |
| - name: run repo tests, using test.cfg for auth | |
| if: matrix.auth == 'token' | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| cd kbase_app | |
| sed -i "s/test_token=/test_token=$KBASE_TEST_TOKEN/" test_local/test.cfg | |
| kb-sdk test | |
| - name: run repo tests, using env var for auth | |
| if: matrix.auth == 'env_var' | |
| env: | |
| KBASE_TEST_TOKEN: ${{ secrets.KBASE_TEST_TOKEN }} | |
| run: | | |
| cd kbase_app | |
| kb-sdk test | |
| - name: make resulting app available as artefact in case of failure | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: kbaseapp-${{ matrix.app }}-${{ matrix.os }} | |
| path: kbase_app |