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add R script #256

Merged
merged 11 commits into from
Apr 14, 2023
Merged

add R script #256

merged 11 commits into from
Apr 14, 2023

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Tianhao-Gu
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codecov bot commented Apr 13, 2023

Codecov Report

Patch coverage: 17.94% and project coverage change: -0.29 ⚠️

Comparison is base (52c38c4) 47.48% compared to head (e6c98f4) 47.19%.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #256      +/-   ##
==========================================
- Coverage   47.48%   47.19%   -0.29%     
==========================================
  Files          49       49              
  Lines        3513     3545      +32     
==========================================
+ Hits         1668     1673       +5     
- Misses       1845     1872      +27     
Impacted Files Coverage Δ
...oaders/genome_collection/compute_genome_attribs.py 14.16% <16.21%> (+0.23%) ⬆️
src/loaders/jobs/taskfarmer/task_generator.py 22.83% <50.00%> (ø)

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MrCreosote
MrCreosote previously approved these changes Apr 14, 2023
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Looks like there are some image building problems to deal with before this can be merged though

@@ -28,6 +28,7 @@ coverage = "==7.2.2"
pytest-cov = "==4.0.0"
ipython = "==8.12.0"
pytest-asyncio = "==0.21.0"
rpy2 = "==3.5.10"
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move rpy2 temporally to dev-packages so that docker image can be built. create a ticket to fix it later.
https://kbase-jira.atlassian.net/browse/RE2022-149

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.. and now codecov is choking

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Everything passed, yay

Although codecov still hasn't updated

Edit: oop, there it goes

@Tianhao-Gu Tianhao-Gu merged commit c170398 into main Apr 14, 2023
@Tianhao-Gu Tianhao-Gu deleted the dev_microtrait branch April 14, 2023 19:41
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2 participants