remove location and path for db

kbase · Aug 16, 2024 · 8ceb7e7 · 8ceb7e7
1 parent e274c45
commit 8ceb7e7
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Showing 3 changed files with 3 additions and 9 deletions.
diff --git a/src/loaders/compute_tools/checkm2/checkm2.py b/src/loaders/compute_tools/checkm2/checkm2.py
@@ -73,11 +73,9 @@ def _run_checkm2(
                 'version': '1.0.1',
                 'command': command,
                 "reference_db": {
-                    "path": "/global/cfs/cdirs/kbase/collections/libraries/checkm2/1.0.1/uniref100.KO.1.dmnd",
-                    "location": "NERSC",
                     "version": None,
                     "comment": "diamond_db, ver unknown",
-                },
+                    },
                 'ids_to_files': ids_to_files}
     create_tool_metadata(output_dir, metadata)
 

diff --git a/src/loaders/compute_tools/eggnog/eggnog.py b/src/loaders/compute_tools/eggnog/eggnog.py
@@ -49,10 +49,8 @@ def _run_eggnog_single(
                 'version': '2.1.12',
                 'command': command,
                 "reference_db": {
-                    "path": "global/cfs/cdirs/kbase/collections/libraries/eggnog/5.0.2",
-                    "location": "NERSC",
                     "version": "5.0.2",
-                },
+                    },
                 }
     create_tool_metadata(output_dir, metadata)
 

diff --git a/src/loaders/compute_tools/gtdb_tk/gtdb_tk.py b/src/loaders/compute_tools/gtdb_tk/gtdb_tk.py
@@ -155,10 +155,8 @@ def _run_gtdb_tk(
                 'version': '2.3.2',
                 'command': command,
                 "reference_db": {
-                    "path": "global/cfs/cdirs/kbase/collections/libraries/gtdb_tk/release214",
-                    "location": "NERSC",
                     "version": "release214",
-                },
+                    },
                 'ids_to_files': ids_to_files}
     create_tool_metadata(output_dir, metadata)