save output files to collectiondata dir

kbase · Mar 14, 2024 · 5999ba1 · 5999ba1
1 parent 361dcd8
commit 5999ba1
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/loaders/compute_tools/eggnog/eggnog.py b/src/loaders/compute_tools/eggnog/eggnog.py
@@ -30,8 +30,8 @@ def _run_eggnog_single(
     # RUN eggNOG for a single genome
     command = ['emapper.py',
                '-i', source_file,  # Input file.
-               '-o', source_file,  # Output prefix.
-                                   # Save result file to source file directory. Expecting 'emapper.annotations', 'emapper.hits' and  'emapper.seed_orthologs' files.
+               '-o', output_dir / source_file.name,  # Output prefix.
+                                                     # Save result file to collectiondata directory. Expecting 'emapper.annotations', 'emapper.hits' and  'emapper.seed_orthologs' files.
                '--itype', f'{INPUT_TYPE}',
                '--cpu', f'{THREADS}',
                '--excel',