Start the NERSC manager at service start and create a job runner

Empty for now, next step is to trigger file download post job creation

cdmtaskservice/app_state.py

@@ -9,17 +9,21 @@
 import logging
 from motor.motor_asyncio import AsyncIOMotorClient
 from pathlib import Path
-from typing import NamedTuple
+from typing import NamedTuple, Any
 
 from fastapi import FastAPI, Request
+from cdmtaskservice import models
 from cdmtaskservice.config import CDMTaskServiceConfig
 from cdmtaskservice.image_remote_lookup import DockerImageInfo
 from cdmtaskservice.images import Images
+from cdmtaskservice.jobflows.nersc_jaws import NERSCJAWSRunner
 from cdmtaskservice.job_state import JobState
 from cdmtaskservice.kb_auth import KBaseAuth
 from cdmtaskservice.mongo import MongoDAO
 from cdmtaskservice.nersc.client import NERSCSFAPIClientProvider
+from cdmtaskservice.nersc.manager import NERSCManager
 from cdmtaskservice.s3.client import S3Client
+from cdmtaskservice.version import VERSION
 
 # The main point of this module is to handle all the application state in one place
 # to keep it consistent and allow for refactoring without breaking other code
@@ -32,6 +36,10 @@ class AppState(NamedTuple):
     s3_client: S3Client
     job_state: JobState
     images: Images
+    # TODO CODE make an abstract jobflow class or something. For now just duck type them
+    # may not even need this, but not hard to do and shows how different flows might work
+    # in the future
+    runners: dict[models.Cluster, Any]
 
 
 async def build_app(
@@ -44,6 +52,7 @@ async def build_app(
     app - the FastAPI app.
     cfg - the CDM task service config.
     """
+    # This method is getting pretty long but it's stupid simple so...
     # May want to parallelize some of this for faster startups. would need to rework prints
     logr = logging.getLogger(__name__)
     logr.info("Connecting to KBase auth service... ")
@@ -54,23 +63,47 @@ async def build_app(
     )
     logr.info("Done")
     logr.info("Initializing NERSC SFAPI client... ")
-    nersc = await NERSCSFAPIClientProvider.create(Path(cfg.sfapi_cred_path), cfg.sfapi_user)
+    sfapi_client = await NERSCSFAPIClientProvider.create(Path(cfg.sfapi_cred_path), cfg.sfapi_user)
+    logr.info("Done")
+    logr.info("Setting up NERSC manager and installing code at NERSC...")
+    remote_code_loc = Path(cfg.nersc_remote_code_dir) / VERSION
+    nerscman = await NERSCManager.create(sfapi_client.get_client, remote_code_loc)
     logr.info("Done")
     logr.info("Initializing S3 client... ")
     s3 = await S3Client.create(
         cfg.s3_url, cfg.s3_access_key, cfg.s3_access_secret, insecure_ssl=cfg.s3_allow_insecure
     )
+    s3_external = await S3Client.create(
+        cfg.s3_external_url,
+        cfg.s3_access_key,
+        cfg.s3_access_secret,
+        insecure_ssl=cfg.s3_allow_insecure,
+        skip_connection_check=not cfg.s3_verify_external_url
+    )
     logr.info("Done")
     logr.info("Initializing MongoDB client...")
     mongocli = await get_mongo_client(cfg)
     logr.info("Done")
     try:
         mongodao = await MongoDAO.create(mongocli[cfg.mongo_db])
         job_state = JobState(mongodao, s3)
+        nerscjawsflow = NERSCJAWSRunner(
+            nerscman,
+            job_state,
+            s3,
+            s3_external,
+            cfg.jaws_token,
+            cfg.jaws_group,
+            cfg.service_root_url,
+            s3_insecure_ssl=cfg.s3_allow_insecure,
+        )
+        runners = {models.Cluster.PERLMUTTER_JAWS: nerscjawsflow}
         imginfo = await DockerImageInfo.create(Path(cfg.crane_path).expanduser().absolute())
         images = Images(mongodao, imginfo)
         app.state._mongo = mongocli
-        app.state._cdmstate = AppState(auth, nersc, s3, job_state, images)
+        app.state._cdmstate = AppState(
+            auth, sfapi_client, s3, job_state, images, runners
+        )
     except:
         mongocli.close()
         raise

cdmtaskservice/jobflows/nersc_jaws.py

@@ -0,0 +1,52 @@
+"""
+Manages running jobs at NERSC using the JAWS system.
+"""
+
+from cdmtaskservice.arg_checkers import not_falsy as _not_falsy, require_string as _require_string
+from cdmtaskservice.job_state import JobState
+from cdmtaskservice.nersc.manager import NERSCManager
+from cdmtaskservice.s3.client import S3Client
+
+# Not sure how other flows would work and how much code they might share. For now just make
+# this work and pull it apart / refactor later.
+
+
+class NERSCJAWSRunner:
+    """
+    Runs jobs at NERSC using JAWS.
+    """
+
+    def __init__(
+        self,
+        nersc_manager: NERSCManager,
+        job_state: JobState,
+        s3_client: S3Client,
+        s3_external_client: S3Client,
+        jaws_token: str,
+        jaws_group: str,
+        service_root_url: str,
+        s3_insecure_ssl: bool = False,
+    ):
+        """
+        Create the runner.
+        
+        nersc_manager - the NERSC manager.
+        job_state - the job state manager.
+        s3_client - an S3 client pointed to the data stores.
+        s3_external_client - an S3 client pointing to an external URL for the S3 data stores
+            that may not be accessible from the current process, but is accessible to remote
+            processes at NERSC.
+        jaws_token - a token for the JGI JAWS system.
+        jaws_group - the group to use for running JAWS jobs.
+        service_root_url - the URL of the service root, used for constructing service callbacks.
+        s3_insecure_url - whether to skip checking the SSL certificate for the S3 instance,
+            leaving the service open to MITM attacks.
+        """
+        self._nman = _not_falsy(nersc_manager, "nersc_manager")
+        self._jstate = _not_falsy(job_state, "job_state")
+        self._s3 = _not_falsy(s3_client, "s3_client")
+        self._s3ext = _not_falsy(s3_external_client, "s3_external_client")
+        self._s3insecure = s3_insecure_ssl
+        self._jtoken = _require_string(jaws_token, "jaws_token")
+        self._jgroup = _require_string(jaws_group, "jaws_group")
+        self._callback_root = _require_string(service_root_url, "service_root_url")

test/jobflows/nersc_jaws_test.py

@@ -0,0 +1,7 @@
+# TODO TEST add tests
+
+from cdmtaskservice.jobflows import nersc_jaws  # @UnusedImport
+
+
+def test_noop():
+    pass