Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Using non root user for jupyterlab #46

Merged
merged 3 commits into from
Jul 10, 2024
Merged

Using non root user for jupyterlab #46

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
b9374c2
using non-root user for jupyter
Tianhao-Gu Jul 10, 2024
ac83bee
Merge branch 'main' of github.com:kbase/cdm-jupyterhub into dev_using…
Tianhao-Gu Jul 10, 2024
dd14840
missed some lib upgrades
Tianhao-Gu Jul 10, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
20 changes: 18 additions & 2 deletions Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,23 @@ COPY ./config/ /opt/config/
ENV CDM_SHARED_DIR=/cdm_shared_workspace
RUN mkdir -p ${CDM_SHARED_DIR} && chmod -R 777 ${CDM_SHARED_DIR}

# TODO: Switch back to non-root user
#USER 1001
# Set up Jupyter directories
ENV JUPYTER_CONFIG_DIR=/.jupyter
ENV JUPYTER_RUNTIME_DIR=/.jupyter/runtime
ENV JUPYTER_DATA_DIR=/.jupyter/data
RUN mkdir -p ${JUPYTER_CONFIG_DIR} ${JUPYTER_RUNTIME_DIR} ${JUPYTER_DATA_DIR}

# Switch back to non-root user

# Create a non-root user
# User 1001 is not defined in /etc/passwd in the bitnami/spark image, causing various issues.
# References:
# https://github.com/bitnami/containers/issues/52698
# https://github.com/bitnami/containers/pull/52661
RUN groupadd -r spark && useradd -r -g spark spark_user

# Change ownership of the .ipython, .jupyter, etc. directories to the non-root user
RUN chown -R spark_user:spark /.ipython /.jupyter /src /opt/config /opt/scripts /cdm_shared_workspace /opt/bitnami
USER spark_user

ENTRYPOINT ["/opt/scripts/entrypoint.sh"]
4 changes: 2 additions & 2 deletions Pipfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,13 +6,13 @@ name = "pypi"
[packages]
jupyterlab= "==4.2.3"
pyspark= "==3.5.1"
boto3 = "==1.34.137"
boto3 = "==1.34.142"
minio = "==7.2.7"
delta-spark = "==3.2.0" # should match JAR version (DELTA_SPARK_VER) specified in the Dockerfile
pandas = "==2.2.2"
pyarrow = "==16.1.0"
sparkmonitor = "==3.0.2"
itables = "==2.1.3"
itables = "==2.1.4"
PyMySQL = "==1.1.1"
urllib3 = "==2.2.2"
jupyterlab-git = "==0.50.1"
Expand Down
14 changes: 7 additions & 7 deletions Pipfile.lock
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

Loading