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update dep
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Tianhao-Gu committed Oct 8, 2024
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31 changes: 16 additions & 15 deletions Pipfile
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Expand Up @@ -5,48 +5,49 @@ name = "pypi"

[packages]
jupyterlab= "==4.2.5"
jupyterhub = "==5.1.0"
jupyterhub-nativeauthenticator = "==1.2.0"
jupyterhub = "==5.2.0"
jupyterhub-nativeauthenticator = "==1.3.0"
dockerspawner = "==13.0.0"
jupyterlab_favorites = "==3.2.2"
sidecar = "==0.7.0"
json5 = "==0.9.25"
pycurl = "==7.45.3"
pyspark= "==3.5.2"
boto3 = "==1.35.16"
minio = "==7.2.8"
pyspark= "==3.5.3"
boto3 = "==1.35.35"
minio = "==7.2.9"
delta-spark = "==3.2.0" # should match JAR version (DELTA_SPARK_VER) specified in the Dockerfile
pandas = "==2.2.2"
pandas = "==2.2.3"
pyarrow = "==17.0.0"
itables = "==2.1.5"
itables = "==2.2.2"
PyMySQL = "==1.1.1"
urllib3 = "==2.2.2"
urllib3 = "==2.2.3"
jupyterlab-git = "==0.50.1"
cdm-jupyterlab-brand-extension = {file = "https://github.com/kbaseincubator/cdm_jupyterlab_brand_extension/raw/main/dist/cdm_jupyterlab_brand_extension-0.1.0-py3-none-any.whl"}

# Frequently utilized scientific libraries by the science team
plotly = "==5.24.0"
plotly = "==5.24.1"
tqdm = "==4.66.5"
ipywidgets = "==8.1.5"
pygraphviz = "==1.13"
pygraphviz = "==1.14"
catboost = "==1.2.5"
scipy = "==1.14.1"
scikit-learn = "==1.5.1"
biopython = "==1.84"
seaborn = "==0.13.2"
geopandas = "==1.0.1"
contextily = "==1.6.2"
dill = "==0.3.8"
dill = "==0.3.9"
folium = "==0.17.0"
geopy = "==2.4.1"
pygeohydro = "==0.17.0"
pynhd = "==0.17.0"
numpy = "==2.1.1"
pygeohydro = "==0.18.0"
pynhd = "==0.18.0"
numpy = "==2.1.2"

[dev-packages]
pytest = "==8.3.3"
coverage = "==7.6.1"
pytest-cov = "==5.0.0"
ipython = "==8.27.0"
ipython = "==8.28.0"

[requires]
python_version = "3.11"
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