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Update to latest version of GSI #8

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i) Updates to modules to use latest gsi (most modules using earlier versions)

ii) Separation of codedir (Jeff's scratch, where default code is), and basedir (user's scratch, where experiment output goes) iii) Code in main.sh to allow over-riding the defaut CONVINFO

…ersions)

ii) Separation of codedir (Jeff's scratch, where default code is), and basedir (user's scratch, where experiment output goes)
iii) Code in main.sh to allow over-riding the defaut CONVINFO
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