add infos to test

Workflow4Metabolomics Galaxy Documentation/W4Mteam/melanie_petera.qmd

@@ -0,0 +1,39 @@
+---
+title: "Mélanie Pétéra"
+image: "../images/melanie_petera.png"
+about:
+  template: trestles
+links: 
+  - icon: twitter
+text: Twitter
+href: "https://twitter.com/workflow4metabo"
+---
+
+She looks angry but she is very cool !
+
+## Education
+
+
+
+## Experience
+
+Engineer in statistics / MSc
+Contact infos
+
+melanie.petera{at}inrae{dot}fr
+phone: +33(0)4 73 62 47 89
+Involved in routine analyses as data analyst and/or data treatment supervisor. Workflow developer for internal data analysis procedures. Participation to Workflow4Metabolomics as a core team member. 
+
+Missions
+
+Data processing and statistical analysis of untargeted MS analyses
+Development and maintenance of in-house data processing workflows
+Training and guidance
+Main publications
+
+Giacomoni, F., Le Corguille, G., Monsoor, M., Landi, M., Pericard, P., Pétéra, M., ... & Caron, C. (2015). Workflow4Metabolomics: a collaborative research infrastructure for computational metabolomics. Bioinformatics, 31(9), 1493-1495.
+dx.doi.org/10.1093/bioinformatics/btu813
+Comte, B., Monnerie, S., Brandolini-Bunlon, M., Canlet, C., Castelli, F., Chu-Van, E., ... & Pujos-Guillot, E. (2021). Multiplatform metabolomics for an integrative exploration of metabolic syndrome in older men. EBioMedicine, 69, 103440.
+doi.org/10.1016/j.ebiom.2021.103440
+Pujos-Guillot, E., Pétéra, M., Jacquemin, J., Centeno, D., Lyan, B., Montoliu, I., ... & Comte, B. (2019). Identification of pre-frailty sub-phenotypes in elderly using metabolomics. Frontiers in physiology, 9, 1903.
+dx.doi.org/10.3389/fphys.2018.01903

Workflow4Metabolomics Galaxy Documentation/W4Mteam/sylvain_dechaumet.qmd

@@ -0,0 +1,21 @@
+---
+title: "Sylvain Dechaumet"
+image: "../images/sylvain_dechaumet.png"
+about:
+  template: trestles
+links: 
+  - icon: twitter
+text: Twitter
+href: "https://twitter.com/workflow4metabo"
+---
+
+He looks angry but he is very cool !
+
+## Education
+
+
+
+## Experience
+
+
+

Workflow4Metabolomics Galaxy Documentation/_quarto.yml

@@ -44,10 +44,11 @@ website:
           - href: w4e2024.qmd
           - text: ""
           - href: w4e2023.qmd
-      - text: "About"
-        href: about.qmd
       - text: "W4M Team"
+        icon: "people"
         href: listing_team.qmd
+      - text: "About"
+        href: about.qmd
 
 
     #background: success

Workflow4Metabolomics Galaxy Documentation/contribute.qmd

@@ -2,6 +2,25 @@
   title: "How to contribute for W4M ?"
 ---
 
-This is a Quarto website.
+Push your tools / W4M as a Showcase
+Your tools can be installed, integrated and hosted within the main W4M instance Tools.
 
-To learn more about Quarto websites visit <https://quarto.org/docs/websites>.
+Quality standards
+However, the tools must stick to the IUC standards in order to be easily integrated:
+
+ Available in a GitHub repository
+ Conda dependencies
+ Functional tests using Planemo
+ Available in the Main ToolShed
+In the first place, your tools will be displayed in the Contribution section of the tool panel. And eventually, it should be promoted among the other tools.
+
+Advanced mode
+In order to be fully integrated in our reference workflows, your tools must follow your exchange formats between tools (for more information, contact us).
+
+A collaboration should be established if help is needed!
+
+Support / HelpDesk
+In all cases, the tools must be maintained by the developers themselves. A tool can be removed if this after sales service isn't done.
+
+Guidelines
+[Writing a tool](https://github.com/jsaintvanne/workflow4metabolomics/blob/doc-ju/GUIDELINES.md#writing-a-tool)

Workflow4Metabolomics Galaxy Documentation/galaxyW4M.qmd

@@ -2,6 +2,21 @@
   title: "What is Galaxy W4M ?"
 ---
 
-This is a Quarto website.
+## Our project 
 
-To learn more about Quarto websites visit <https://quarto.org/docs/websites>.
+The Workflow4Metabolomics, W4M in short, is a French infrastructure offering software tool processing, analyzing and annotating metabolomics data. It is based on the Galaxy platform.
+
+In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field.
+
+## Galaxy
+
+Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.
+
+Homepage: [https://galaxyproject.org/](https://galaxyproject.org/)
+
+workflow
+
+
+## Citation
+
+Giacomoni F., Le Corguillé G., Monsoor M., Landi M., Pericard P., Pétéra M., Duperier C., Tremblay-Franco M., Martin J.-F., Jacob D., Goulitquer S., Thévenot E.A. and Caron C. (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics, [http://dx.doi.org/10.1093/bioinformatics/btu813](http://dx.doi.org/10.1093/bioinformatics/btu813)

Workflow4Metabolomics Galaxy Documentation/listing_team.qmd

@@ -5,4 +5,4 @@ listing:
   type: grid
 ---
 
-About this site
+Here are all the participants for the development of a beautiful and usefull W4M Galaxy.