add publish.yml

.github/workflows/publish.yml

@@ -0,0 +1,53 @@
+# Workflow for rendering and deploying quarto site to GitHub Pages
+# Based on the GitHub example static content deploy action
+name: Deploy Quarto site to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+  branches: ["doc-ju"]
+# Allows you to run this workflow manually from the Actions tab
+workflow_dispatch:
+
+  # Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+  permissions:
+  contents: read
+pages: write
+id-token: write
+
+# Allow one concurrent deployment
+concurrency:
+  group: "pages"
+cancel-in-progress: true
+
+jobs:
+  # Single deploy job since we're just deploying
+  render-deploy:
+  environment:
+  name: github-pages
+url: ${{ steps.deployment.outputs.page_url }}
+runs-on: ubuntu-latest
+steps:
+  - name: Checkout
+    uses: actions/checkout@v3
+
+  - name: Set up Quarto
+    uses: quarto-dev/quarto-actions/setup@v2
+
+  - name: Render
+    uses: quarto-dev/quarto-actions/render@v2
+    with:
+      path: 'Workflow4Metabolomics Galaxy Documentation'
+
+  - name: Setup Pages
+    uses: actions/configure-pages@v2
+
+  - name: Upload artifact
+    uses: actions/upload-pages-artifact@v1
+    with:
+      # Upload quarto render output directory
+      path: 'Workflow4Metabolomics Galaxy Documentation/_site'
+
+  - name: Deploy to GitHub Pages
+      id: deployment
+      uses: actions/deploy-pages@v1