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MANIFEST
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analysis/B1.sh
analysis/B10.sh
analysis/B57.conf
analysis/B57.sh
analysis/B59.sh
analysis/B60.sh
analysis/B67.sh
analysis/B68.sh
analysis/B7.conf
analysis/B7.sh
analysis/B8.conf
analysis/B8.sh
analysis/B9.sh
analysis/D12.conf
analysis/D12.sh
analysis/D14.conf
analysis/D14.sh
analysis/D39.sh
analysis/D40.conf
analysis/D40.sh
analysis/D41.sh
analysis/D42.sh
analysis/D55.conf
analysis/D55.sh
analysis/D58.conf
analysis/D58.sh
analysis/D65.sh
analysis/D66.sh
analysis/D69.conf
analysis/D69.sh
analysis/D70.conf
analysis/D70.sh
analysis/D71.sh
analysis/E49.sh
analysis/E50.conf
analysis/E50.sh
analysis/E51.sh
analysis/E52.sh
analysis/E54.conf
analysis/E54.sh
analysis/E72.sh
analysis/L44.sh
analysis/L45.conf
analysis/L45.sh
analysis/L46.sh
analysis/L63.conf
analysis/L63.sh
analysis/L73.conf
analysis/L73.sh
analysis/README
analysis/S34.sh
analysis/S35.conf
analysis/S35.sh
analysis/S37.sh
analysis/S56.conf
analysis/S56.sh
analysis/S61.sh
analysis/S62.sh
analysis/S74.sh
analysis/W19.sh
analysis/W20.conf
analysis/W20.sh
analysis/W21.sh
analysis/W22.sh
analysis/W64.conf
analysis/W64.sh
analysis/W75.sh
build_3rd_party.sh
dependencies/garli-2.01.tar.gz
dependencies/Seq-Gen.v1.3.3.tgz
dependencies/standard-RAxML-master.zip
examples.sh
examples/aa.ga
examples/aa.gaps.phy
examples/aa.garli.conf
examples/aa.partitions
examples/aa.phy
examples/char.partitions
examples/char.phy
examples/garli.conf
examples/H0.garli.tre
examples/H0.tre
examples/jc69.garli.conf
examples/nt.partitions
examples/nt.phy
LICENSE
Makefile.PL
MANIFEST
published_datasets/dixon.phy
published_datasets/dixonetal2007.D69.susko.tre
published_datasets/dixonetal2007.D70.susko.tre
published_datasets/dixonetal2007.garli.tre
published_datasets/dixonetal2007.phy
published_datasets/dixonetal2007.phy.reduced
published_datasets/dixonetal2007.tre
published_datasets/Dunnetal2005.D71.susko.tre
published_datasets/Dunnetal2005.garli.tre
published_datasets/Dunnetal2005.phy
published_datasets/Dunnetal2005.phy.reduced
published_datasets/Dunnetal2005.tre
published_datasets/Edwardsetal2005.E72.susko.tre
published_datasets/Edwardsetal2005.garli.tre
published_datasets/Edwardsetal2005.phy
published_datasets/Edwardsetal2005.tre
published_datasets/Liuetal2011.garli.tre
published_datasets/Liuetal2011.L73.susko.tre
published_datasets/Liuetal2011.phy
published_datasets/Liuetal2011.tre
published_datasets/README
published_datasets/Sullivan12S.B67.susko.tre
published_datasets/Sullivan12S.B68.susko.tre
published_datasets/Sullivan12S.H0.garli.tre
published_datasets/Sullivan12S.H0.susko.tre
published_datasets/Sullivan12S.H0.tre
published_datasets/Sullivan12S.phy
published_datasets/Sullivanetal2000.garli.tre
published_datasets/Sullivanetal2000.phy
published_datasets/Sullivanetal2000.S74.susko.tre
published_datasets/Sullivanetal2000.tre
published_datasets/wangetal2008.garli.tre
published_datasets/wangetal2008.phy
published_datasets/wangetal2008.phy.reduced
published_datasets/wangetal2008.tre
published_datasets/wangetal2008.W75.susko.tre
README.md
sowhat
sowhat.bibtex
t/sowhat.t