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1. phylotocol phylotocol Public

   template, example, and instructions on how to make an a priori phylogenetic protocol

   8 2

2. sowhat sowhat Public

   Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)

   Perl 11 4

3. alien_index alien_index Public

   identify potential non-animal transcripts in animal transcriptomes

   Perl 11 4

4. FastqSifter FastqSifter Public

   Separate contaminating reads from FASTQ files (e.g., mitochondria, symbionts, bacterial or human contaminants)

   Perl 9 2

5. matemaker matemaker Public

   make artificial mate pairs from long sequences for scaffolding

   Perl 3

6. estimate_genome_size.pl estimate_genome_size.pl Public

   Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish

   Perl 56 20