install mpi4py and openmpi with conda-forge for ubuntu build

jonescompneurolab · Sep 27, 2023 · df7c61b · df7c61b
1 parent 2b15ba6
commit df7c61b
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/.github/workflows/unit_tests.yml b/.github/workflows/unit_tests.yml
@@ -27,18 +27,15 @@ jobs:
           if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
             sudo add-apt-repository ppa:ubuntu-toolchain-r/test
             sudo apt-get update
+            sudo apt-get install libopenmpi-dev openmpi-bin
           fi;
       - name: Install dependencies
         shell: bash -el {0}
         run: |
           python -m pip install --upgrade pip
           pip install flake8 pytest pytest-cov
           pip install psutil joblib
-          if [ "${{ matrix.os }}" == "ubuntu-latest" ]; then
-            pip install mpi4py
-          else
-            conda install --yes mpi4py openmpi
-          fi
+          conda install --yes -c conda-forge mpi4py openmpi
       - name: Install HNN-core
         shell: bash -el {0}
         run: |