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jonescompneurolab · Oct 4, 2023 · 1c6f010 · 1c6f010
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diff --git a/dev/.buildinfo b/dev/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 4bb91016ef597deb1a2e26fd13b8808c
+config: 3400e427391bcf9e9b6d3ab727e445a1
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip b/dev/_downloads/07fcc19ba03226cd3d83d4e40ec44385/auto_examples_python.zip
diff --git a/dev/_downloads/0c72935893aeb250a0d8212cbf71dc3b/plot_simulate_somato.ipynb b/dev/_downloads/0c72935893aeb250a0d8212cbf71dc3b/plot_simulate_somato.ipynb
@@ -22,7 +22,7 @@
       "cell_type": "markdown",
       "metadata": {},
       "source": [
-        "First, we will import the packages needed for computing the inverse solution\nfrom the MNE somatosensory dataset. `MNE`_ can be installed with\n``pip install mne``, and the somatosensory dataset can be downloaded by\nimporting ``somato`` from ``mne.datasets``.\n\n"
+        "First, we will import the packages needed for computing the inverse solution\nfrom the MNE somatosensory dataset. `MNE`_ (and its dependency `NiBabel`_)\ncan be installed with ``pip install mne nibabel``\nThe somatosensory dataset can be downloaded by\nimporting ``somato`` from ``mne.datasets``.\n\n"
       ]
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@@ -272,7 +272,7 @@
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diff --git a/dev/_downloads/0fd653b58bb82a761560d19cc4428cb2/plot_simulate_beta.ipynb b/dev/_downloads/0fd653b58bb82a761560d19cc4428cb2/plot_simulate_beta.ipynb
@@ -240,7 +240,7 @@
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diff --git a/dev/_downloads/12426e10b2d103b701594265884a8e87/plot_simulate_alpha.ipynb b/dev/_downloads/12426e10b2d103b701594265884a8e87/plot_simulate_alpha.ipynb
@@ -132,7 +132,7 @@
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diff --git a/dev/_downloads/1503fb649a4170740c674a81a6ae05e7/plot_record_extracellular_potentials.ipynb b/dev/_downloads/1503fb649a4170740c674a81a6ae05e7/plot_record_extracellular_potentials.ipynb
@@ -132,7 +132,7 @@
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diff --git a/dev/_downloads/1d5e89fac4992660f401256dcccfc8a6/plot_firing_pattern.ipynb b/dev/_downloads/1d5e89fac4992660f401256dcccfc8a6/plot_firing_pattern.ipynb
@@ -233,7 +233,7 @@
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diff --git a/dev/_downloads/226c065209319f439a4634abb56c9969/plot_connectivity.ipynb b/dev/_downloads/226c065209319f439a4634abb56c9969/plot_connectivity.ipynb
@@ -215,7 +215,7 @@
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diff --git a/dev/_downloads/42c2bc2c8bb242b9023a53d758d5a028/plot_simulate_evoked.ipynb b/dev/_downloads/42c2bc2c8bb242b9023a53d758d5a028/plot_simulate_evoked.ipynb
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diff --git a/dev/_downloads/4fb7f4980e22706b9bee1e0b5ead0f51/optimize_evoked.ipynb b/dev/_downloads/4fb7f4980e22706b9bee1e0b5ead0f51/optimize_evoked.ipynb
@@ -161,7 +161,7 @@
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diff --git a/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip b/dev/_downloads/6f1e7a639e0699d6164445b55e6c116d/auto_examples_jupyter.zip
diff --git a/dev/_downloads/ad0567c178c70ed72ff124a87da4ca27/plot_simulate_mpi_backend.ipynb b/dev/_downloads/ad0567c178c70ed72ff124a87da4ca27/plot_simulate_mpi_backend.ipynb
@@ -89,7 +89,7 @@
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diff --git a/dev/_downloads/bd532dfdfea4cdb048bf357711790850/plot_simulate_gamma.ipynb b/dev/_downloads/bd532dfdfea4cdb048bf357711790850/plot_simulate_gamma.ipynb
@@ -215,7 +215,7 @@
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diff --git a/dev/_downloads/da335535e73df8f35bb41d8acf0d9243/plot_simulate_somato.py b/dev/_downloads/da335535e73df8f35bb41d8acf0d9243/plot_simulate_somato.py
@@ -22,8 +22,9 @@
 
 ###############################################################################
 # First, we will import the packages needed for computing the inverse solution
-# from the MNE somatosensory dataset. `MNE`_ can be installed with
-# ``pip install mne``, and the somatosensory dataset can be downloaded by
+# from the MNE somatosensory dataset. `MNE`_ (and its dependency `NiBabel`_)
+# can be installed with ``pip install mne nibabel``
+# The somatosensory dataset can be downloaded by
 # importing ``somato`` from ``mne.datasets``.
 import os.path as op
 import matplotlib.pyplot as plt
@@ -271,6 +272,7 @@
 # .. LINKS
 #
 # .. _MNE: https://mne.tools/
+# .. _NiBabel: https://nipy.org/nibabel/
 # .. _HNN ERP tutorial: https://jonescompneurolab.github.io/hnn-tutorials/erp/erp
 # .. _this MNE-python example: https://mne.tools/stable/auto_examples/inverse/plot_label_source_activations.html
 # .. |mne_label_fig| image:: https://user-images.githubusercontent.com/20212206/106524603-cfe75c80-64b0-11eb-9607-3415195c3e7a.png

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diff --git a/dev/_images/sphx_glr_plot_simulate_mpi_backend_001.png b/dev/_images/sphx_glr_plot_simulate_mpi_backend_001.png
diff --git a/dev/_images/sphx_glr_plot_simulate_somato_001.png b/dev/_images/sphx_glr_plot_simulate_somato_001.png
diff --git a/dev/_images/sphx_glr_plot_simulate_somato_002.png b/dev/_images/sphx_glr_plot_simulate_somato_002.png
diff --git a/dev/_modules/hnn_core/cell.html b/dev/_modules/hnn_core/cell.html
@@ -5,21 +5,18 @@
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     <title>hnn_core.cell &#8212; hnn-core  documentation</title>
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@@ -1078,7 +1075,7 @@ <h1>Source code for hnn_core.cell</h1><div class="highlight"><pre>
     </p>
     <p>
         &copy; Copyright 2023, HNN Developers.<br/>
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 5.3.0.<br/>
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 7.1.2.<br/>
     </p>
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 </footer>

diff --git a/dev/_modules/hnn_core/cell_response.html b/dev/_modules/hnn_core/cell_response.html
@@ -5,21 +5,18 @@
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     <title>hnn_core.cell_response &#8212; hnn-core  documentation</title>
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@@ -682,7 +679,7 @@ <h1>Source code for hnn_core.cell_response</h1><div class="highlight"><pre>
     </p>
     <p>
         &copy; Copyright 2023, HNN Developers.<br/>
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 5.3.0.<br/>
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 7.1.2.<br/>
     </p>
   </div>
 </footer>

diff --git a/dev/_modules/hnn_core/dipole.html b/dev/_modules/hnn_core/dipole.html
@@ -5,21 +5,18 @@
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     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>hnn_core.dipole &#8212; hnn-core  documentation</title>
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@@ -896,7 +893,7 @@ <h1>Source code for hnn_core.dipole</h1><div class="highlight"><pre>
     </p>
     <p>
         &copy; Copyright 2023, HNN Developers.<br/>
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 5.3.0.<br/>
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 7.1.2.<br/>
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diff --git a/dev/_modules/hnn_core/extracellular.html b/dev/_modules/hnn_core/extracellular.html
@@ -5,21 +5,18 @@
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     <title>hnn_core.extracellular &#8212; hnn-core  documentation</title>
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+    <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
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@@ -832,7 +829,7 @@ <h1>Source code for hnn_core.extracellular</h1><div class="highlight"><pre>
     </p>
     <p>
         &copy; Copyright 2023, HNN Developers.<br/>
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 5.3.0.<br/>
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 7.1.2.<br/>
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diff --git a/dev/_modules/hnn_core/gui/gui.html b/dev/_modules/hnn_core/gui/gui.html
@@ -5,21 +5,18 @@
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     <title>hnn_core.gui.gui &#8212; hnn-core  documentation</title>
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+    <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
+    <link rel="stylesheet" type="text/css" href="../../../_static/bootstrap-sphinx.css?v=9afac83c" />
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@@ -1515,7 +1512,7 @@ <h1>Source code for hnn_core.gui.gui</h1><div class="highlight"><pre>
     </p>
     <p>
         &copy; Copyright 2023, HNN Developers.<br/>
-      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 5.3.0.<br/>
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 7.1.2.<br/>
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