[WIP] Fix GUI MPI available cores #607
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Unit tests | |
| on: | |
| push: | |
| branches: ['**'] | |
| pull_request: | |
| branches: ['**'] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest,macos-latest] | |
| python-version: [3.8, 3.11, 3.12] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Ubuntu System dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -el {0} | |
| run: | | |
| sudo add-apt-repository ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| sudo apt-get install libopenmpi-dev openmpi-bin | |
| - name: Activate conda environment for macOS | |
| if: matrix.os == 'macos-latest' | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| fetch-depth: 2 | |
| - name: Activate Python environment for Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| shell: bash -el {0} | |
| run: | | |
| if [ ${{ matrix.os }} == 'macos-latest' ]; then | |
| python -m pip install --upgrade pip | |
| conda install --yes -c conda-forge mpi4py openmpi | |
| elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then | |
| python -m pip install --upgrade pip | |
| python -m pip install mpi4py | |
| fi | |
| - name: Install HNN-core | |
| shell: bash -el {0} | |
| run: | | |
| pip install --verbose '.[opt, parallel, test, gui]' | |
| - name: Lint with flake8 | |
| shell: bash -el {0} | |
| run: | | |
| flake8 --count hnn_core | |
| - name: Test with pytest | |
| shell: bash -el {0} | |
| run: | | |
| python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| shell: bash -el {0} | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) -f ./coverage.xml |