ENH: Refactor BatchSimulate Example and Improve Documentation
#590
Workflow file for this run
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| name: Unit tests | |
| on: | |
| push: | |
| branches: ['**'] | |
| pull_request: | |
| branches: ['**'] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest,macos-latest] | |
| python-version: [3.8, 3.11, 3.12] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Ubuntu System dependencies | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -el {0} | |
| run: | | |
| sudo add-apt-repository ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| sudo apt-get install libopenmpi-dev openmpi-bin | |
| - name: Activate conda environment for macOS | |
| if: matrix.os == 'macos-latest' | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: test | |
| python-version: ${{ matrix.python-version }} | |
| fetch-depth: 2 | |
| - name: Activate Python environment for Ubuntu | |
| if: matrix.os == 'ubuntu-latest' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Python dependencies | |
| shell: bash -el {0} | |
| run: | | |
| if [ ${{ matrix.os }} == 'macos-latest' ]; then | |
| python -m pip install --upgrade pip | |
| conda install --yes -c conda-forge mpi4py openmpi | |
| elif [[ "${{ matrix.os }}" == "ubuntu-latest" ]]; then | |
| python -m pip install --upgrade pip | |
| python -m pip install mpi4py | |
| fi | |
| - name: Install HNN-core | |
| shell: bash -el {0} | |
| run: | | |
| pip install --verbose '.[opt, parallel, test, gui]' | |
| - name: Lint with flake8 | |
| shell: bash -el {0} | |
| run: | | |
| flake8 --count hnn_core | |
| - name: Test with pytest | |
| shell: bash -el {0} | |
| run: | | |
| python -m pytest ./hnn_core/tests/ --cov=hnn_core --cov-report=xml | |
| - name: Upload coverage to Codecov | |
| shell: bash -el {0} | |
| run: | | |
| bash <(curl -s https://codecov.io/bash) -f ./coverage.xml |