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1. cantinilab/scPRINT cantinilab/scPRINT Public

   Forked from jkobject/scPRINT

   single cell foundation model for Gene network inference and more

   Jupyter Notebook 33 4

2. scDataLoader scDataLoader Public

   a dataloader to work with large single cell datasets from lamindb

   Jupyter Notebook 17 4

3. broadinstitute/depmap_omics broadinstitute/depmap_omics Public

   What you need to process the Quarterly DepMap-Omics releases from Terra

   HTML 112 22

4. broadinstitute/genepy broadinstitute/genepy Public

   Forked from jkobject/genepy

   Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python

   Python 20 5

5. flatironinstitute/CaImAn flatironinstitute/CaImAn Public

   Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

   Python 643 371

6. broadinstitute/celligner broadinstitute/celligner Public

   tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.

   Jupyter Notebook 8 4