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edited doc_filter_mrc.md slightly
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jewettaij committed Jun 28, 2021
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Expand Up @@ -7,7 +7,7 @@ filter_mrc
It can also detect point-like (or sphere-like) **blobs**.
*(* **WARNING:** *The detection of curves is experimental as of 2021-6-21.)*

It can also be used local minima-finding, clustering, and
**filter_mrc** can be used local minima-finding, clustering, and
[classic watershed segmentation](https://imagej.net/Classic_Watershed).
The coordinates of the objects that are detected can be saved to
text files for processing and refinement using popular 3rd-party software tools
Expand All @@ -16,20 +16,20 @@ The *filter_mrc* program can also apply simple filters to an 3D image
(tomogram), and save the result as a new .mrc/.rec file.
Several primitive filters are included including
low-pass, high-pass,
edge detectors,
ridge detectors,
thresholding,
brightness inversions,
[generalized](https://en.wikipedia.org/wiki/Generalized_normal_distribution#Version_1)
[Gaussian](https://en.wikipedia.org/wiki/Gaussian_blur),
[Difference-of-Gaussian](https://en.wikipedia.org/wiki/Difference_of_Gaussians),
[Laplacian-of-Gaussian](https://en.wikipedia.org/wiki/Blob_detection#The_Laplacian_of_Gaussian),
edge detectors,
and fluctuation (noise) detectors
are available
and fluctuation (noise) detectors are available

Lastly, the *filter_mrc* program can be used as a crude paint program
to modify, edit, or annotate existing volumetric images.

All filters support "masking".
All operations support "masking".
An image *mask* can be used to exclude certain
voxels or regions from consideration.
(Typically these are voxels which have been characterized previously.
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