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added back query report in README for reference
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jermp committed Sep 26, 2024
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Expand Up @@ -219,6 +219,14 @@ and the one just built (Example 3, canonical).

./sshash query -i salmonella_100.canon.index -q ../data/queries/SRR5833294.10K.fastq.gz

Both queries should originate the following report (reported here for reference):

==== query report:
num_kmers = 460000
num_positive_kmers = 46 (0.01%)
num_searches = 42/46 (91.3043%)
num_extensions = 4/46 (8.69565%)

The canonical dictionary can be twice as fast as the regular dictionary
for low-hit workloads, even on this tiny example, for only +0.4 bits/k-mer.

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