up

CondaPkg.toml

@@ -5,9 +5,10 @@ plotly = ""
 seaborn = ""
 tqdm = ""
 pandas = ""
-openml = ""
+mkl = ""
+openml = "0.14.2"
 xgboost = ""
 skorch = ""
 pytorch = ""
-numpy = ""
+numpy = "1.26.4"
 umap-learn = ""

Dockerfile

@@ -1,4 +1,4 @@
-FROM julia:1.9.3
+FROM julia:1.10.4
 
 # HTTP port
 EXPOSE 8000
@@ -20,10 +20,14 @@ ENV html_export=true
 ENV JULIA_PKG_DEVDIR=/home
 ENV DISABLE_CACHE_SAVE=
 COPY --chown=MLCourse notebooks/.cache notebooks/.cache
+COPY --chown=MLCourse flies flies
 
 # Initialize the julia project environment that will be used to run the bind server.
 # RUN julia --project=/home/MLCourse -e "import Pkg; Pkg.instantiate(); Pkg.precompile(); using MLCourse"
-RUN julia -e 'import Pkg; Pkg.activate(joinpath(Pkg.devdir(), "MLCourse")); Pkg.instantiate(); using Pluto, MLCourse, MLJ, MLJLinearModels; session = Pluto.ServerSession(); session.options.server.port = 40404; session.options.server.launch_browser = false; session.options.security.require_secret_for_access = false; t = @async Pluto.run(session); sleep(30); @async Base.throwto(t, InterruptException()); Pkg.activate(joinpath(Pkg.devdir(), "MLCourse", "RLEnv")); Pkg.instantiate();'
+RUN julia -e 'import Pkg; Pkg.activate(joinpath(Pkg.devdir(), "MLCourse")); Pkg.instantiate()'
+RUN julia -e 'import Pkg; Pkg.activate(joinpath(Pkg.devdir(), "MLCourse")); using Pluto, MLCourse, MLJ, MLJLinearModels; session = Pluto.ServerSession(); session.options.server.port = 40404; session.options.server.launch_browser = false; session.options.security.require_secret_for_access = false; t = @async Pluto.run(session); sleep(30); @async Base.throwto(t, InterruptException());'
+RUN julia -e 'import Pkg; Pkg.activate(joinpath(Pkg.devdir(), "MLCourse", "RLEnv")); Pkg.instantiate();'
+RUN julia -e 'import Pkg; Pkg.activate(joinpath(Pkg.devdir(), "MLCourse", "flies")); Pkg.instantiate();'
 
 # The "default command" for this docker thing.
-CMD ["julia", "--project=/home/MLCourse", "-e", "import PlutoSliderServer; PlutoSliderServer.run_directory(\".\"; Export_baked_notebookfile = false, SliderServer_port=8000, SliderServer_exclude = [\"notebooks/rnn.jl\", \"extras/transfer_learning.jl\", \"extras/generative_models.jl\"], Export_exclude = [\"notebooks/rnn.jl\", \"extras/transfer_learning.jl\", \"extras/generative_models.jl\"], SliderServer_host=\"0.0.0.0\", Export_slider_server_url=\"https://bio322.epfl.ch/\")"]
+CMD ["julia", "--project=/home/MLCourse", "-e", "import PlutoSliderServer; PlutoSliderServer.run_directory(\".\"; Export_baked_statefile = false, Export_baked_notebookfile = false, SliderServer_port=8000, SliderServer_exclude = [\"notebooks/rnn.jl\", \"extras/transfer_learning.jl\", \"extras/generative_models.jl\"], Export_exclude = [\"notebooks/rnn.jl\", \"extras/transfer_learning.jl\", \"extras/generative_models.jl\"], SliderServer_host=\"0.0.0.0\", Export_slider_server_url=\"https://bio322.epfl.ch/\")"]