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Adjust the configure function to commander v8 #422

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As of commander v8, the options are no longer present on commander itself; they are only available through commander.opts().

Without this change, the options template, css and marked are ignored in Docco 0.9+. I discovered this while trying to recompile the annotated sources of Underscore.

@jashkenas Note that I did not yet recompile the docco.js.

As of commander v8, the options are no longer present on commander
itself; they are only available through commander.opts().
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