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| title: "scplotter：单细胞可视化神包！" | ||
| date: 2024-10-29T11:49:29Z | ||
| draft: ["false"] | ||
| tags: [ | ||
| "fetched", | ||
| "老俊俊的生信笔记" | ||
| ] | ||
| categories: ["Acdemic"] | ||
| --- | ||
| scplotter：单细胞可视化神包！ by 老俊俊的生信笔记 | ||
| ------ | ||
| <div><section data-tool="mdnice编辑器" data-website="https://www.mdnice.com" data-mpa-powered-by="yiban.io"><section><mp-common-profile data-pluginname="mpprofile" data-id="MzkyMTI1MTYxNA==" data-headimg="http://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4usezgsqIGqjITSMggCTSoViaYeoKe2xoZr1IIvNJoztibQxibYHLDDoiabwAc6Ggws3Tvdo8EPss2nLgaVQ/0?wx_fmt=png" data-nickname="老俊俊的生信笔记" data-alias="JunJunLab" data-signature="老俊俊的生信技能和知识分享,我不是巨人,但你可以站在我的肩膀上更进一步!" data-from="0" data-is_biz_ban="0"></mp-common-profile></section></section><section><mp-common-clmusic data-pluginname="insertaudio" type="1" music_name="%E9%9B%A8%E5%A4%A9" albumurl="http://wx.y.gtimg.cn/music/photo_new/T002R500x500M000000VMnoi2Lgt44_2.jpg" singer="孙燕姿" duration="241000" username="" music_source="1" is_vip="1" listenid="78238778601585665"></mp-common-clmusic></section><section data-tool="mdnice编辑器" data-website="https://www.mdnice.com"><h2 data-tool="mdnice编辑器"><span></span><span>引言</span><span></span></h2><blockquote data-tool="mdnice编辑器"><span>❝</span><p>网上冲浪偶然看到的一个 R 包 <strong>scplotter</strong>，单细胞可视化种类非常全，觉得非常不错，分享给大家！</p></blockquote><p data-tool="mdnice编辑器"><strong>github 地址：</strong></p><p data-tool="mdnice编辑器"><strong>https://github.com/pwwang/scplotter/tree/master</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031781" data-ratio="0.5985533453887885" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGr2M88VZ0kb3OH3vkNnU9gxqKVGicmGpwZdZB2UcyBia1x4gjiaGRVPGssg/640?wx_fmt=png&from=appmsg" data-type="png" data-w="1106" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGr2M88VZ0kb3OH3vkNnU9gxqKVGicmGpwZdZB2UcyBia1x4gjiaGRVPGssg/640?wx_fmt=png&from=appmsg"></figure><h2 data-tool="mdnice编辑器"><span></span><span>安装</span><span></span></h2><pre data-tool="mdnice编辑器"><span></span><code>remotes::install_github(<span>"pwwang/scplotter"</span>)<br><span># or</span><br>devtools::install_github(<span>"pwwang/scplotter"</span>)<br><span># or using conda</span><br>$ conda install pwwang::r-scplotter<br></code></pre><h2 data-tool="mdnice编辑器"><span></span><span>介绍</span><span></span></h2><p data-tool="mdnice编辑器"><strong>CellDimPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031782" data-ratio="0.8" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrZB2ZicA7nsPG0UjibcAWuzPKNpcdHgABPjujNd2cv2hyBFVpobkSvQMg/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrZB2ZicA7nsPG0UjibcAWuzPKNpcdHgABPjujNd2cv2hyBFVpobkSvQMg/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>CellStatPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031780" data-ratio="0.9333333333333333" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrRKZjMAr23iaILHqll4VhEpMm08P06KAicwRickibFYpickxNy7cJdY8FX7w/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrRKZjMAr23iaILHqll4VhEpMm08P06KAicwRickibFYpickxNy7cJdY8FX7w/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>ClustreePlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031779" data-ratio="0.288" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrelVAQO273JgaTDwZX6xtUnkl7snCU44xXBxvya1snlsQoDq4S1VwibQ/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrelVAQO273JgaTDwZX6xtUnkl7snCU44xXBxvya1snlsQoDq4S1VwibQ/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>FeatureStatPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031783" data-ratio="1.9333333333333333" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrFYyUC9A4GCCwTRI3DSYQfqSafrd4sMweyqh6fjDUAdREiblJVrLaUYA/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrFYyUC9A4GCCwTRI3DSYQfqSafrd4sMweyqh6fjDUAdREiblJVrLaUYA/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>EnrichmentPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031784" data-ratio="0.768" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrXwmfCaOufpwCuc0KnnlmFajRyXIs3rrskzXTy5cSfGGibZD6eicTQIjg/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrXwmfCaOufpwCuc0KnnlmFajRyXIs3rrskzXTy5cSfGGibZD6eicTQIjg/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>GSEASummaryPlot | GSEAPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031785" data-ratio="0.5813333333333334" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGr5Scfro0NiaeSN1FJdeN8H6p3X9Lj7Ua7BwwYFia2Qevj4iaHdZepvibPBg/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGr5Scfro0NiaeSN1FJdeN8H6p3X9Lj7Ua7BwwYFia2Qevj4iaHdZepvibPBg/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>VolcanoPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031786" data-ratio="0.288" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrSSia5KDY624Ha6Kic5PyrLqf9QZOwMxPFznKZYNfXwD13a4RkXRBDzEw/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrSSia5KDY624Ha6Kic5PyrLqf9QZOwMxPFznKZYNfXwD13a4RkXRBDzEw/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>CCCPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031788" data-ratio="0.8906666666666667" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGr2wxVPUBGDYC69aWFhYibfsFPBmPHZ3HNgMEr9e8T8ibicjHrWHiaosgrUQ/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGr2wxVPUBGDYC69aWFhYibfsFPBmPHZ3HNgMEr9e8T8ibicjHrWHiaosgrUQ/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>ClonalVolumePlot | ClonalAbundancePlot | ClonalResidencyPlot | ClonalCompositionPlot | ClonalOverlapPlot | ClonalGeneUsagePlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031787" data-ratio="1.468" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrD0YTdibzWL7TCZ87vl6rVrSHzEfia8PhoQLcy3uKbPtkInXickPDbw9wQ/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrD0YTdibzWL7TCZ87vl6rVrSHzEfia8PhoQLcy3uKbPtkInXickPDbw9wQ/640?wx_fmt=png&from=appmsg"></figure><p data-tool="mdnice编辑器"><strong>ClonalRarefactionPlot | ClonalGeneUsagePlot | ClonalDiversityPlot | ClonalPositionalPlot：</strong></p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031793" data-ratio="0.6226666666666667" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrUYyVMMd6aibQvYmYMD5oVBwPqpaYevTg5AKdmCjmib6DicEYcia2J3Afjw/640?wx_fmt=png&from=appmsg" data-type="png" data-w="750" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrUYyVMMd6aibQvYmYMD5oVBwPqpaYevTg5AKdmCjmib6DicEYcia2J3Afjw/640?wx_fmt=png&from=appmsg"></figure><h2 data-tool="mdnice编辑器"><span></span><span>结尾</span><span></span></h2><blockquote data-tool="mdnice编辑器"><span>❝</span><p><strong>路漫漫其修远兮,吾将上下而求索。</strong></p></blockquote><hr data-tool="mdnice编辑器"><p data-tool="mdnice编辑器">欢迎加入生信交流群。加我微信我也拉你进 <strong>微信群聊</strong> <strong>老俊俊生信交流群</strong> <strong>(微信交流群需收取 20 元入群费用,一旦交费,拒不退还!(防止骗子和便于管理))</strong> 。</p><figure data-tool="mdnice编辑器"><img data-imgfileid="100031792" data-ratio="0.6083707025411061" data-src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrDumx8tjKwCp2F7Q6SbCH0jahatRKqvjGCvocSicwStiavibAEf5xCXO2w/640?wx_fmt=png&from=appmsg" data-type="png" data-w="669" src="https://mmbiz.qpic.cn/sz_mmbiz_png/G5jjcE4useytQASn6xTOvTqibCricMibUGrDumx8tjKwCp2F7Q6SbCH0jahatRKqvjGCvocSicwStiavibAEf5xCXO2w/640?wx_fmt=png&from=appmsg"></figure><hr data-tool="mdnice编辑器"><p data-tool="mdnice编辑器"><strong></strong></p><center data-tool="mdnice编辑器"><strong> 往期回顾目录 </strong></center><p data-tool="mdnice编辑器"><br></p><blockquote data-tool="mdnice编辑器"><span>❝</span><p><strong></strong></p><center><strong><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515426&idx=1&sn=a4911c55b9f53ea046cf7aebc5fc0855&chksm=c1848753f6f30e4561303f7f5da0edcb9008ca7925b111e25cb365f9df7962bd57c937c341cb&token=96515316&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">GseaVis 绘制山脊图</a></strong></center><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515405&idx=1&sn=d3b3ba1ffe1f533ea0fe2f0daf1823a6&chksm=c184877cf6f30e6a36e6e4a32c2677a37dd3ebd24f4e9da823d435f6af9e28678b99676e860b&token=96515316&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">ClusterGvis 综合使用手册</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515358&idx=1&sn=98fe527ac548ee46720c11a26b723d39&chksm=c18486aff6f30fb9c0953f5a8d7a1aa39b4dcb8202bb5c34cf61cadae042f8eb2e8631dc36c1&token=2130598365&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">ClusterGvis 进行 TCseq 聚类分析</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515345&idx=1&sn=a57b858a3b02af88baf27bc990c8540d&chksm=c18486a0f6f30fb627fa948b07e5b59348fa16eb9e9f9bff3f0895a61ab7c2fdbaa8f9a23d76&token=2130598365&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">GseaVis 使用文档</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515329&idx=1&sn=48aef9779d113c6c0bbdb5848de285f7&chksm=c18486b0f6f30fa6fd5437d175f8fa42e4c811f23c9f982572237305d57c6d490088381ec4a5&token=1520616408&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">R 语言里的非标准求值</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515312&idx=1&sn=82b8aa5ca4f9e0621d3afb20a7dbaf69&chksm=c18486c1f6f30fd70062ee76e62a9ae724cb9ad4aa5ac255cdf932b691abd71d1433f2c7108f&token=1460764668&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">fastplyr 加速 dplyr？</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515280&idx=1&sn=defc9a1c16991378192d39cd07f8ab2b&chksm=c18486e1f6f30ff714bb06fc51b6ac30640f4e8fc12e33675e23e11321501ddd0338c15e8f73&token=289129565&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">离散傅里叶计算 riboseq 的 3nt 周期性</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515259&idx=1&sn=b19dca820116f79399ce38141c6bd9e5&chksm=c184860af6f30f1caac47d51f32d5bd8507e8b38ddafb7faff22aed751f63f5fdcbd8ea4163c&token=1715275324&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">Nature 文章的数据也如此奇妙</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515217&idx=1&sn=0f6aa07f021f19dd8c29bc182b1c4973&chksm=c1848620f6f30f362a55caa9aa1b1fba6e24f871545c78927ef5f6c73f99debd8164b7c8644c&token=1715275324&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">bam/sam 文件里的 flag16 的序列可能和你想的不一样</a></center></strong><strong><center><a href="https://mp.weixin.qq.com/s?__biz=MzkyMTI1MTYxNA==&mid=2247515196&idx=1&sn=827ad75ace9c9f9d71e89ca35ea37035&chksm=c184864df6f30f5b1456a60f32b1d9884daa6a0060dd8596c3283e69af8d600778e8d92ac1c9&token=2067075838&lang=zh_CN&scene=21#wechat_redirect" data-linktype="2">IGV 也能查看 ribo-seq 的 E/P/A density</a></center></strong><p><br></p></blockquote></section><p><br></p><p><mp-style-type data-value="3"></mp-style-type></p></div> | ||
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