顶刊Figure复现合集 热图篇​

docs/2024-11/顶刊Figure复现合集_热图篇_.md

@@ -0,0 +1,15 @@
+---
+title: "顶刊Figure复现合集 热图篇​"
+date: 2024-11-23T14:32:13Z
+draft: ["false"]
+tags: [
+  "fetched",
+  "在生信的坑里挖呀挖呀挖"
+]
+categories: ["Acdemic"]
+---
+顶刊Figure复现合集 热图篇​ by 在生信的坑里挖呀挖呀挖
+------
+<div><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002833" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><em><strong>顶刊Figure复现合集 热图篇</strong></em></p></section></section></section></section></section><section><section><span>《科研的“争先恐后”》，这是个合集系列。</span></section><p><span>之前整理过数据库相关的，有了</span></p></section><section><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247486236&amp;idx=1&amp;sn=afa61727eede3d201b3ab22441b87fcc&amp;chksm=c0c9d192f7be58846ee647650cae4e107fc3a9dfc1a448805c30e134e9c1dcb9416dabb0db56&amp;scene=21#wechat_redirect" textvalue="《科研的“争先恐后”，数据库这条捷径》" linktype="text" imgurl="" imgdata="null" data-itemshowtype="0" tab="innerlink" data-linktype="2"><span>《科研的“争先恐后”，数据库这条捷径》</span></a></p><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247486253&amp;idx=1&amp;sn=3288024ddc7683c8c8053b92121b87c5&amp;chksm=c0c9d1a3f7be58b52b3ee4269b79dc8f423a6bd10a0f9b92b9fd9f086c3421f54a74f3f26cae&amp;scene=21#wechat_redirect" textvalue="《科研的“争先恐后”，数据库这条捷径(2)》" linktype="text" imgurl="" imgdata="null" data-itemshowtype="0" tab="innerlink" data-linktype="2"><span>《科研的“争先恐后”，数据库这条捷径(2)》<br></span></a></p><section><span>期刊同款图绘制也写过不少，所以有了绘图合集。</span><span>就从5篇热图开始吧，各式各样的。</span><br></section><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002830" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><span><em><strong>Cell同款</strong></em></span></p></section></section></section></section></section><p><span>、</span></p><section><mp-common-sticker data-pluginname="emotion" data-id="e7745c45b70a504d9de7041f000449b4" data-type="1" data-emoji_url="https://mmbiz.qpic.cn/mmbiz_gif/8fAicib2ibbWjQkqYKN38DOwnS5LjLnv2f0ibP0Zicq0KicZlJSSLuptIEKyJewciau2brlHYiaSRwcM0CFKn4GToQYlMw/0" data-md5="e7745c45b70a504d9de7041f000449b4" data-inserted="0" data-is_ban="0" data-loading="0"></mp-common-sticker></section><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247485956&amp;idx=1&amp;sn=9e14fffb1c9da73add59492fba9f3766&amp;chksm=c0c9d08af7be599c9033e2ea5a86a3f0ba42d3a92546a2619fa861450cb7bdb90a53ac48ab3c&amp;scene=21#wechat_redirect" textvalue="Cell同款 | 热图 标记基因+行列注释" linktype="image" imgurl="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrbrtTAQoBxF3xbuQV7iaAiaret5c4wHkOickkiaNeoC6mO6sbGzqhlmMbNA/0?wx_fmt=png&amp;from=appmsg" imgdata="[object Object]" data-itemshowtype="0" tab="innerlink" data-linktype="1"><span><img data-galleryid="" data-imgfileid="100002836" data-ratio="1.000925925925926" data-s="300,640" data-src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrbrtTAQoBxF3xbuQV7iaAiaret5c4wHkOickkiaNeoC6mO6sbGzqhlmMbNA/640?wx_fmt=png&amp;from=appmsg" data-type="png" data-w="1080" src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrbrtTAQoBxF3xbuQV7iaAiaret5c4wHkOickkiaNeoC6mO6sbGzqhlmMbNA/640?wx_fmt=png&amp;from=appmsg"></span></a></p><p><br></p><section><span>知识点</span></section><ol><li><p><span>学会用ComplexHeatmap绘热图</span></p></li><li><p><span>学会给热图标记特定基因</span></p></li><li><p><span>学会基因和样本进行分类或分组，也就是行和列添加注释</span></p></li><li><p><span>学会处理有特殊字符的输入文件</span><br></p></li></ol></section><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002831" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><span><em><strong>Cancer Cell同款</strong></em></span></p></section></section></section></section></section><section><section><mp-common-sticker data-pluginname="emotion" data-id="e7745c45b70a504d9de7041f000449b4" data-type="1" data-emoji_url="https://mmbiz.qpic.cn/mmbiz_gif/8fAicib2ibbWjQkqYKN38DOwnS5LjLnv2f0ibP0Zicq0KicZlJSSLuptIEKyJewciau2brlHYiaSRwcM0CFKn4GToQYlMw/0" data-md5="e7745c45b70a504d9de7041f000449b4" data-inserted="0" data-is_ban="0" data-loading="0"></mp-common-sticker></section><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247483781&amp;idx=1&amp;sn=0794395777239e23c27c9f7fb58c80e8&amp;chksm=c0c9db0bf7be521d0e1f3276d74f694d4b1886fc877b24f841d9dca26ba5f4c9efcc4eacd4a5&amp;scene=21#wechat_redirect" textvalue="Cancer Cell同款 | 热图" linktype="image" imgurl="http://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrXxBtWehP7uw4TIjGXtGHnAcrG7OEeay5OqaEl8fB5iaJNg25O2siaTicQ/0?wx_fmt=png" imgdata="null" data-itemshowtype="0" tab="innerlink" data-linktype="1"><span><img data-ratio="1.5210420841683367" data-s="300,640" data-src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrXxBtWehP7uw4TIjGXtGHnAcrG7OEeay5OqaEl8fB5iaJNg25O2siaTicQ/640?wx_fmt=png" data-type="png" data-w="998" src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrXxBtWehP7uw4TIjGXtGHnAcrG7OEeay5OqaEl8fB5iaJNg25O2siaTicQ/640?wx_fmt=png"></span></a><br></p></section><p><span><br></span></p><section><span>知识点</span></section><ol><li><p><span>学会用<span>pheatmap绘制热图</span></span></p></li><li><p><span>标记特定基因</span></p></li><li><p><span>添加显著性标记，也就是热图色块添加文本</span></p></li></ol><section><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002829" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><span><em><strong>Molecular Therapy同款</strong></em></span></p></section></section></section></section></section><section><mp-common-sticker data-pluginname="emotion" data-id="e7745c45b70a504d9de7041f000449b4" data-type="1" data-emoji_url="https://mmbiz.qpic.cn/mmbiz_gif/8fAicib2ibbWjQkqYKN38DOwnS5LjLnv2f0ibP0Zicq0KicZlJSSLuptIEKyJewciau2brlHYiaSRwcM0CFKn4GToQYlMw/0" data-md5="e7745c45b70a504d9de7041f000449b4" data-inserted="0" data-is_ban="0" data-loading="0"></mp-common-sticker></section><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247484713&amp;idx=1&amp;sn=d8e5ef559943e9625b8c28c53e4506dc&amp;chksm=c0c9dfa7f7be56b1d2ac3edfb97ab6cad7e8bfac7fcbf3b3d3418826d0671051af689aabc249&amp;scene=21#wechat_redirect" textvalue="Molecular Therapy同款 | 热图" linktype="image" imgurl="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrnRSicdDaFk2td2srPWib4YvzL8FVqkiaeqKvcOslteV9Seu4IjVwzaVQA/0?wx_fmt=png&amp;from=appmsg" imgdata="[object Object]" data-itemshowtype="0" tab="innerlink" data-linktype="1"><span><img data-galleryid="" data-imgfileid="100002837" data-ratio="1.25" data-s="300,640" data-src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrnRSicdDaFk2td2srPWib4YvzL8FVqkiaeqKvcOslteV9Seu4IjVwzaVQA/640?wx_fmt=png&amp;from=appmsg" data-type="png" data-w="1080" src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrnRSicdDaFk2td2srPWib4YvzL8FVqkiaeqKvcOslteV9Seu4IjVwzaVQA/640?wx_fmt=png&amp;from=appmsg"></span></a><br></p><p><br></p><section><span>知识点</span></section><ol><li><p><span>学会用ComplexHeatmap绘热图</span></p></li><li><p><span>标记个别重点基因</span></p></li><li><p><span>设置基因聚类</span></p></li><li><p><span>添加样本的分组</span></p></li></ol><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002832" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><span><em><strong>Int J Biol Sci同款</strong></em></span></p></section></section></section></section></section><section><mp-common-sticker data-pluginname="emotion" data-id="e7745c45b70a504d9de7041f000449b4" data-type="1" data-emoji_url="https://mmbiz.qpic.cn/mmbiz_gif/8fAicib2ibbWjQkqYKN38DOwnS5LjLnv2f0ibP0Zicq0KicZlJSSLuptIEKyJewciau2brlHYiaSRwcM0CFKn4GToQYlMw/0" data-md5="e7745c45b70a504d9de7041f000449b4" data-inserted="0" data-is_ban="0" data-loading="0"></mp-common-sticker></section><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247484550&amp;idx=1&amp;sn=1efa2155f38d149db236e743698b119c&amp;chksm=c0c9de08f7be571e2157293f1132a0975d70cf1d810b8033dd78cc3d114a37e3315d8b25633c&amp;scene=21#wechat_redirect" textvalue="Int J Biol Sci同款 | 相关性热图" linktype="image" imgurl="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrP0xnH6JlD4WNsMzcBAWq2JOZcib2AMaicyA6QBeGaedBRnetV3zOEXrw/0?wx_fmt=png&amp;from=appmsg" imgdata="[object Object]" data-itemshowtype="0" tab="innerlink" data-linktype="1"><span><img data-galleryid="" data-imgfileid="100002838" data-ratio="0.9222222222222223" data-s="300,640" data-src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrP0xnH6JlD4WNsMzcBAWq2JOZcib2AMaicyA6QBeGaedBRnetV3zOEXrw/640?wx_fmt=png&amp;from=appmsg" data-type="png" data-w="1080" src="https://mmbiz.qpic.cn/mmbiz_png/5Xcqh70GgVljpmiaqBQkcribxMqW2WycgrP0xnH6JlD4WNsMzcBAWq2JOZcib2AMaicyA6QBeGaedBRnetV3zOEXrw/640?wx_fmt=png&amp;from=appmsg"></span></a><br></p><p><span><br></span></p><p><span>知识点</span></p><ol><li><p>学会用<span>corrplot</span>绘制基因相关性热图</p></li><li><p><span>学会计算相关性</span></p></li><li><p><span>学会展示特定的相关性值</span></p></li></ol><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002840" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><span><em><strong>Cell同款</strong></em></span></p></section></section></section></section></section><section><span>、</span><span>学会了画热图，再看下画啥样的热图，今天就以发在Cell上的Figure为例，都是Cell里的热图噢，果然配色很常见，样式很典型。详见</span><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247485907&amp;idx=1&amp;sn=587aebacba931d8baa0d23ca72ee899c&amp;chksm=c0c9d35df7be5a4b03385f3972e9d1b5bcf82088b759df5e8885886ff63d8d72be4b7cd39ff1&amp;scene=21#wechat_redirect" textvalue="《Cell同款 | 配色 热图篇》" linktype="text" imgurl="" imgdata="null" data-itemshowtype="0" tab="innerlink" data-linktype="2"><span><span>《</span><span>Cell同款 | 配色 热图篇</span><span>》</span></span></a></section></section><section><p><span><strong><span></span></strong></span></p><section data-support="96编辑器" data-style-id="60024"><section data-align="title"><section><section><p><img data-imgfileid="100002834" data-ratio="0.9833333333333333" data-src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg" data-w="60" src="https://mmbiz.qpic.cn/mmbiz_png/Ljib4So7yuWiakFqwlv8wjicu6JR7sFmyVYGeJJAzScfvp6paLcdL4fMicUpRbhNv0yAEHTkTicGosvt1X709EsnzmA/640?wx_fmt=png&amp;from=appmsg"></p></section><section><section><p><span><em><strong>往期精彩回顾</strong></em></span></p></section></section></section></section></section><ul><li><p><a target="_blank" href="http://mp.weixin.qq.com/s?__biz=MzkwODUyOTYzMw==&amp;mid=2247486476&amp;idx=1&amp;sn=2b656939aae75687760b447bd99a7e58&amp;chksm=c0c9d682f7be5f94bc93d0775c2dce350966ad4255eded326ed2314eaf8762eb99e2dc3bc33a&amp;scene=21#wechat_redirect" textvalue="生信实用技能盘点 | readlink" linktype="text" imgurl="" imgdata="null" data-itemshowtype="0" tab="innerlink" data-linktype="2"><span>生信实用技能盘点 | 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+<a href="https://mp.weixin.qq.com/s/TgycXV67CvAUoJGGwneL6w",target="_blank" rel="noopener noreferrer">原文链接</a>