Sample definition routes #248
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| res = query.count() | ||
| if res == 0: | ||
| raise HTTPException( | ||
| status_code=403, detail="User is not authorized for proposal" |
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Here i would return 404 Proposal not found and log that the user was attempting to access a proposal for which they didn't have access
| old_sample.Crystal = crystal | ||
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| proposal = crystal.Protein.Proposal | ||
| authorize_for_proposal(proposal.proposalId) |
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I dont think you should need this.
old_sample = get_samples(blSampleId=blSampleId, skip=0, limit=1).first
will check the authorization of the current user vs the sample and return an empty list if they dont have access, thus throwing IndexError which the route function will catch
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| @router.get("/components/types", response_model=list[schema.ComponentType]) |
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Returning a list is technically not a valid REST response. It should be encapsulated in a dict. Could be solved by simply paginating this response
| return Paged(total=total, results=results, skip=skip, limit=limit) | ||
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| def get_component_types() -> list[models.ComponentType]: |
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Maybe paginate these responses, if only for consistency?
| return results | ||
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| def get_concentration_types() -> list[models.ConcentrationType]: |
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Same as above, maybe paginate these responses, if only for consistency?
| sample = crud.update_sample(blSampleId=blSampleId, sample=sample) | ||
| return sample | ||
| except IndexError: | ||
| raise HTTPException(status_code=404, detail="Sample not found") |
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You might like a final except Exception to catch anything else that might go wrong as is done on the shipment route:
except Exception:
logger.exception(
f"Could not update shipping `{shippingId}` with payload `{shipping}`"
)
raise HTTPException(status_code=400, detail="Could not update shipment")
| ) -> models.BLSample: | ||
| """create a sample""" | ||
| sample = crud.create_sample(sample=sample) | ||
| return sample |
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you can concat this onto a single line
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Probably also need a couple of checks for |
Routes for ssx sample definition: